Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0970
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    28   4.1  
At2g38570.1 68415.m04738 expressed protein ; expression supporte...    27   5.4  
At5g63290.1 68418.m07943 coproporphyrinogen oxidase-related low ...    27   7.1  
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    27   9.4  
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    27   9.4  
At1g11340.1 68414.m01302 S-locus lectin protein kinase family pr...    27   9.4  

>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 341 HKNTTNCKYIYCCSRMSN---HHSQSLASGLWTLLSIQFMTVYTSVTGC*LLVSENIVC 174
           HKN +  K  Y CS   N   H + ++ + +W  + ++  T  T       +V +N++C
Sbjct: 310 HKNVSQYKGAYSCSVCPNYAVHSTCAVRTDVWDGVELEGTTEITEDISPFKVVGDNLIC 368


>At2g38570.1 68415.m04738 expressed protein ; expression supported
           by MPSS
          Length = 302

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -2

Query: 285 PQPESCKWSMDLIKYSVHDCIYLGDR 208
           P  E+C+W +  I++S+ +C ++  +
Sbjct: 22  PNSETCRWRLKRIQHSILNCFWIDSK 47


>At5g63290.1 68418.m07943 coproporphyrinogen oxidase-related low
           similarity to coproporphyrinogen III oxidase from
           Geobacillus stearothermophilus [GI:2104798]; contains
           Pfam profile PF04055: radical SAM domain protein
          Length = 484

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 264 WSMDLIKYSVHDCIYLGDRVLTVSIREHCLHVTLINLK 151
           WSMDLI    H  + + +  L ++I     HV++ +L+
Sbjct: 228 WSMDLISSLPHQTLEMWEESLRLAIESQPNHVSVYDLQ 265


>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 329 TNCKYIY-CCSRMSNHHSQSLASGLWTLLSIQFMTVYTSVTGC*LLV 192
           T+C +    C   +N++ QSLA   +  ++++F  +Y S+TG  L V
Sbjct: 747 TSCDWFSDFCPVRTNNNVQSLAYQAYFYVAMKFKLLYFSITGQKLFV 793


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 329 TNCKYIY-CCSRMSNHHSQSLASGLWTLLSIQFMTVYTSVTGC*LLV 192
           T+C +    C   +N++ QSLA   +  ++++F  +Y S+TG  L V
Sbjct: 747 TSCDWFSDFCPVRTNNNVQSLAYQAYFYVAMKFKLLYFSITGQKLFV 793


>At1g11340.1 68414.m01302 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 901

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 338 KNTTNCKYIYCCSRMSNHHS 279
           +N TNC ++ CC   +N  S
Sbjct: 516 RNVTNCHFVLCCKGATNAES 535


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,496,813
Number of Sequences: 28952
Number of extensions: 142801
Number of successful extensions: 249
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)