Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0969
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0300 - 13993744-13994076,13994188-13994373,13994446-139953...    32   0.45 
04_03_0491 - 16519274-16519552,16519945-16520195,16520317-165204...    29   2.4  
01_06_0594 - 30473915-30474533,30474667-30474962                       29   3.2  
06_01_0462 - 3285667-3288123                                           28   7.4  

>06_02_0300 -
           13993744-13994076,13994188-13994373,13994446-13995363,
           13995869-13996021
          Length = 529

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 3   LVDPPGCRNRHEEAVPYAELHLVRSDVCGTLTCR 104
           LVD PG R++  + V   +LHL R ++ G +  R
Sbjct: 323 LVDAPGGRHKRADGVELGDLHLTRDNIKGLIMAR 356


>04_03_0491 -
           16519274-16519552,16519945-16520195,16520317-16520408,
           16520409-16520605,16521462-16521501,16522915-16522994
          Length = 312

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +2

Query: 434 KFSKRLKSIHFTGF*MFYDNNISKYILFKRCDLNLTRKCCENLEFPSTSKIKLV 595
           K  ++ +S++  G   +    I++Y+L +RC L+L R  CE++     S I L+
Sbjct: 189 KRMRKTRSVYEIGPRSWIKKEINEYVL-ERCILSLARTFCESIGLVEESSITLM 241


>01_06_0594 - 30473915-30474533,30474667-30474962
          Length = 304

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -2

Query: 126 RNNKHMLICMLMY-HKH-LNVPNAIQHRALP--PRADSCSPGDPLV 1
           RN+   +I    + H H   VP A   +A P  P+A +CSP +P+V
Sbjct: 120 RNDPDTVIVTYSFEHNHSATVPRAQNRQAAPQKPKAQACSPPEPVV 165


>06_01_0462 - 3285667-3288123
          Length = 818

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 455 ILTFSRIFNNTQATKKSTNH*KPFLITKTGVQIPRFYGKSSKLAT 321
           +  F+ IF     T    NH KPFL  ++ +    F  + S ++T
Sbjct: 4   VYIFTTIFFLLMPTIALANHRKPFLARRSSISTQAFIARRSSIST 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,440,248
Number of Sequences: 37544
Number of extensions: 275895
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)