Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0969
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23110-1|AAA03544.1|  744|Caenorhabditis elegans BMP receptor pr...    28   5.0  
AF047651-12|AAN63460.1|  592|Caenorhabditis elegans Abnormal dau...    28   5.0  
AF047651-10|AAC02726.1|  744|Caenorhabditis elegans Abnormal dau...    28   5.0  
Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>L23110-1|AAA03544.1|  744|Caenorhabditis elegans BMP receptor
           protein.
          Length = 744

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 93  MYHKHLNVPNAIQHRALPPRADSCSPGDPL 4
           M H H + P+  QH +  P  DSC P  P+
Sbjct: 637 MQHYHASSPSKRQHPSPNPFFDSCPPPPPI 666


>AF047651-12|AAN63460.1|  592|Caenorhabditis elegans Abnormal dauer
           formation protein4, isoform c protein.
          Length = 592

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 93  MYHKHLNVPNAIQHRALPPRADSCSPGDPL 4
           M H H + P+  QH +  P  DSC P  P+
Sbjct: 485 MQHYHASSPSKRQHPSPNPFFDSCPPPPPI 514


>AF047651-10|AAC02726.1|  744|Caenorhabditis elegans Abnormal dauer
           formation protein4, isoform a protein.
          Length = 744

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 93  MYHKHLNVPNAIQHRALPPRADSCSPGDPL 4
           M H H + P+  QH +  P  DSC P  P+
Sbjct: 637 MQHYHASSPSKRQHPSPNPFFDSCPPPPPI 666


>Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 286 VSLSHILQTKSSVASLEDFP*NLGIWTPVLVIKNGF*WLVDFLVAWVL 429
           +S + +L+T+ +  + +  P N  +      +K+   WLVD +VAW+L
Sbjct: 102 ISNNKVLRTRMNNTAYKPIPNNEKVDLARFRVKDPNEWLVDDVVAWML 149


>Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 286 VSLSHILQTKSSVASLEDFP*NLGIWTPVLVIKNGF*WLVDFLVAWVL 429
           +S + +L+T+ +  + +  P N  +      +K+   WLVD +VAW+L
Sbjct: 102 ISNNKVLRTRMNNTAYKPIPNNEKVDLARFRVKDPNEWLVDDVVAWML 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,943,554
Number of Sequences: 27780
Number of extensions: 266651
Number of successful extensions: 455
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)