Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0968
         (468 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR...    29   1.6  
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ...    28   2.7  

>At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1163

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -3

Query: 112  SIFILSSLKYRC*NRCKKIKA 50
            SI +LSSL+  C N+CKK+K+
Sbjct: 1053 SIEVLSSLRTLCLNKCKKLKS 1073


>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 766

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 270 CYKLLMFIYEEFTKY*EVCAYVIH 341
           CY+ +   Y +++ Y EVC+YV+H
Sbjct: 409 CYQKVDTNYGQYSCYHEVCSYVVH 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,293,681
Number of Sequences: 28952
Number of extensions: 141906
Number of successful extensions: 220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)