Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0967
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     30   0.29 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   3.6  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    25   8.3  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   8.3  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   8.3  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   8.3  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   8.3  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -3

Query: 486 NLLFFYYLSVIYYVICIAFSL 424
           +++FF YLS I YVIC  FSL
Sbjct: 450 SIVFFGYLSWIGYVICFVFSL 470


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 317 LVKKSVISIHFLKSKYELKFPYTGTKYK 400
           L +  V S  FLK+ Y+++F Y  T+Y+
Sbjct: 614 LERGQVPSREFLKNVYDIEFIYDNTRYR 641


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 220 DPKSEDKWRKVQYD 261
           D K+E+ WR VQYD
Sbjct: 953 DAKAENGWRAVQYD 966


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 142 GGPRGRNFIQMKWKELTGILNSDSSGDPKSEDK 240
           GG   + F++++ K  +  LN+     PK ED+
Sbjct: 149 GGSSSQEFVKLEEKHYSPSLNAMEQTSPKEEDE 181


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 145 GPRGRNFIQMKWKELTGILNSDSSGDP 225
           G + +N I   W+  TGIL+  S   P
Sbjct: 95  GSQPQNLICFDWERFTGILDQQSLNSP 121


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 501 TAFCLNLLFFYYLSVIYYVICIAFSLIVF*YSF 403
           T +C +  ++ +L V++Y    A   I + YSF
Sbjct: 381 TFYCWDNYYYSFLQVVHYTSITAAGYISYTYSF 413


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 510 RNYINSKVSPNTAFRNRIVT*TILEPY 590
           R Y++SK+SPNT   N  V   ++E Y
Sbjct: 622 RVYVHSKISPNTDTYNEYV--PVMEAY 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,674
Number of Sequences: 5004
Number of extensions: 42961
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)