Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0967
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893...    29   3.7  
07_01_0304 + 2177044-2177046,2177173-2177235,2177323-2177460,217...    28   6.4  

>02_02_0322 -
           8938101-8938149,8938235-8938458,8938545-8938605,
           8938724-8940761,8940797-8940908,8942037-8942047,
           8942293-8942443
          Length = 881

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -3

Query: 546 QCSDLLSN*CNYVIFTAFCLNLLFFYYLSVIYYVICIAFSLIV--F*YSFY-LYLVPVY 379
           +C   L    NY ++           YL ++Y + CI FSL    F  SF   YLV +Y
Sbjct: 26  KCEKFLPELPNYSVYVCGGCGATLQDYLQIVYRISCIKFSLSFKGFLKSFQSAYLVKIY 84


>07_01_0304 +
           2177044-2177046,2177173-2177235,2177323-2177460,
           2177886-2178778,2178935-2179005,2179132-2179234,
           2180017-2180092,2180870-2180977
          Length = 484

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +2

Query: 296 VNFRACTL-VKKSVISIH-FLKSKYELKFP 379
           V+F A ++ ++  +I IH F++ KY LKFP
Sbjct: 97  VDFNALSVDIENEIIIIHNFIRDKYRLKFP 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,927,449
Number of Sequences: 37544
Number of extensions: 231184
Number of successful extensions: 541
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)