Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0967
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_27219| Best HMM Match : Cad (HMM E-Value=4)                         28   6.6  
SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)                    28   6.6  
SB_53058| Best HMM Match : Y_Y_Y (HMM E-Value=2.2)                     28   6.6  
SB_36705| Best HMM Match : RRF (HMM E-Value=0.26)                      28   6.6  

>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 136  PSGGPRGRNFIQMKWKELTGILNSDSSGDPKSEDK-WRKVQYDRRNLASLNIAAGQLSRM 312
            P+ GP  R  I +K K  T  L S  +  P + D  W +V       +   +AA  L R+
Sbjct: 1245 PASGPLTRTPILLK-KTPTPALESAPAAMPDATDTAWNRVSVTYFLESEAYVAADALRRV 1303

Query: 313  YTCKKKC 333
            +T K+ C
Sbjct: 1304 HTGKRVC 1310


>SB_27219| Best HMM Match : Cad (HMM E-Value=4)
          Length = 297

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 471 YYLSVIYYVICIAFSLIVF*YSFYLYL-VPVYGNFNSYFDFRK*MLITLFFT 319
           YY   +YY I + +S+ V+ YS  +Y  V VY + N Y+       + ++++
Sbjct: 39  YYSIDVYYSIDVYYSVTVY-YSINVYYSVNVYYSINVYYSINVYYSVNVYYS 89



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 471 YYLSVIYYVICIAFSLIVF*YSFYLYL-VPVYGNFNSYFDFRK*MLITLFFT 319
           YY   +YY I + +S+ V+ YS  +Y  V VY + N Y+       +T++++
Sbjct: 99  YYSVNVYYSINVYYSVNVY-YSVNVYYSVNVYYSVNVYYSVNVYYSVTVYYS 149


>SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)
          Length = 708

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +1

Query: 136 PSGGPRGRNFIQMKWKELTGILNSDSSGDPKSEDKWRKVQY-----DRRNLASLNIAAGQ 300
           P   P+ R+F+QM W++ T  +    S  P  E  +    Y     DRR L +  + AG+
Sbjct: 627 PQLTPKDRHFVQMIWRK-TRAVGMAHSRSPSGEYTFVVALYGGPGIDRRTLRANVLRAGR 685

Query: 301 LSRMYT 318
              +YT
Sbjct: 686 SHDVYT 691


>SB_53058| Best HMM Match : Y_Y_Y (HMM E-Value=2.2)
          Length = 229

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 498 AFCLNLLFFYYLSVIYYVICIAFSLIVF*YSFYLYLVPVYG 376
           AF  N   FY+  V +Y     F    F + FY + V +YG
Sbjct: 143 AFYFNGFAFYFYGVAFYFDGFTFYFYGFAFYFYEFAVYLYG 183


>SB_36705| Best HMM Match : RRF (HMM E-Value=0.26)
          Length = 397

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +1

Query: 160 NFIQMKW--KELTGILNSDSSGDPKSEDKWRKVQYDRRNLASLNIAAGQLSRMYT 318
           N +++K+   EL G +N+ +  D + ED WRK+      L +L I+A ++  + T
Sbjct: 222 NLVRIKFYRNELYGHVNAAAFDDVEFEDYWRKISLP---LIALGISADEIDVLKT 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,845,893
Number of Sequences: 59808
Number of extensions: 295003
Number of successful extensions: 712
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)