Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0967
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    32   0.35 
AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    30   1.4  
Z81557-1|CAB04535.1|  343|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z77656-3|CAB01140.1|  424|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF326788-1|AAK38269.1|  424|Caenorhabditis elegans CLN-3.1 protein.    28   5.7  
Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    27   10.0 

>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
 Frame = -3

Query: 525 N*CNYVIFTAFCLNLLF----FYYLSVIYYVICIAFSLIVF*YSFYLYLVPVYGN----- 373
           N  N+V+   F +NL F    FY ++ + + + I FSL+ F   FY +     G+     
Sbjct: 151 NCLNFVLALIFLINLNFNVISFYMVNSLIFYLAITFSLLFFKKIFYAWKRFKQGSLASEF 210

Query: 372 FNSYFDFRK*MLITLFFTSVHARKLTCG 289
           FN Y +F+   L  +F   V     TCG
Sbjct: 211 FNKYMNFK---LPNIFLDGVPTE--TCG 233


>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
 Frame = -3

Query: 513 YVIFTAFCLNLLF-FYYLSVIYYVICIAFSLIVF*YS---FYLYLVPVYGNFNSYFDFRK 346
           Y+IF   C+++ F FY L     +I   F +++F  +   F++Y +P  G     F F +
Sbjct: 75  YLIFVLTCISVFFCFYSLFSSLCIITQVFHVLLFVLAVERFFIYFIPSSGKL---FKFSR 131

Query: 345 *MLITLFFTSVHARKLTC 292
             +  L+F  +  ++++C
Sbjct: 132 CKIKPLYFLII-TKEVSC 148


>Z81557-1|CAB04535.1|  343|Caenorhabditis elegans Hypothetical
           protein F59A1.3 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = -3

Query: 513 YVIFTAFCLNL---LFFYYLSVIYYVICIAFSLIVF*YSFYLYLVPVYGNFNSYFDFRK* 343
           YVIF+   L L   + F+Y+++      +   L+VF +  Y YL     N +  F F   
Sbjct: 72  YVIFSRNVLGLPRHVSFWYIALNCTCYSMIMLLLVF-HFLYRYLAVCKPNMSKLFSFPYV 130

Query: 342 MLITLFFTSVHARKLTCG 289
            ++ L F  V A  L  G
Sbjct: 131 TILILIFVFVSAEWLVLG 148


>Z77656-3|CAB01140.1|  424|Caenorhabditis elegans Hypothetical
           protein F07B10.1 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 492 CLNLLFFYYLSVIYY--VICIAFSLIVF 415
           C+N++FF++ +V ++   I I F LIVF
Sbjct: 335 CVNMIFFFFEAVYWFTPTIIIIFVLIVF 362


>AF326788-1|AAK38269.1|  424|Caenorhabditis elegans CLN-3.1 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 492 CLNLLFFYYLSVIYY--VICIAFSLIVF 415
           C+N++FF++ +V ++   I I F LIVF
Sbjct: 335 CVNMIFFFFEAVYWFTPTIIIIFVLIVF 362


>Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical
           protein T10H4.2 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 468 YLSVIYYVICIAFSLIVF*YSFYLYLV 388
           +L+V YYV CI F + VF  +  L L+
Sbjct: 6   WLNVTYYVECICFGVAVFLNTILLILI 32


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 516 NYVIFTAFCLNLLFFYYLSVIYYVICIAFSLIVF*YSFYL 397
           N V+F+   L  L FYY+  I   I I  S I   +SFY+
Sbjct: 186 NTVVFSVQKLGFLHFYYMGGI--AIVIVLSTIYAVHSFYI 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,090,555
Number of Sequences: 27780
Number of extensions: 236175
Number of successful extensions: 645
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)