Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0966
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           28   1.3  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   5.4  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   7.2  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.2  

>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = -3

Query: 220 NSARSKTGTRNDSFAIMMHNKLTRLSENTRDVYRLHEIANE*PKRVIQLAE 68
           N+   +   RN+ F + +H+K++  ++   +   + E  NE  K +I L++
Sbjct: 608 NNVGDRVSFRNEKFRVYVHSKISPNTDTYNEYVPVMEAYNEAVKSLINLSD 658


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 390 SVCKKEKKYIDGELVVSRGCTWKRQDDFE 476
           +V   +  Y++ E+V  +   W+R  DFE
Sbjct: 32  TVTSSDGSYVEYEIVHQKRSVWRRYSDFE 60


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 298 ILKGSLHSGFTLDEHAQQFTGSLSFT 221
           ++  SLH+ F  + HA   TG LS T
Sbjct: 897 VVVNSLHNYFFAEAHASSVTGVLSIT 922


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 244 FTGSLSFTNSARSKTGTRNDSFAIMMHNKLTRLS 143
           F GSL FT+  R+KT      F+++  +KL + +
Sbjct: 730 FKGSLLFTDDKRNKTEDSTVFFSMICSSKLDQFA 763


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,382
Number of Sequences: 5004
Number of extensions: 49363
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)