Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0966
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1278 - 25413432-25413652,25413678-25413769,25413944-25414146     29   2.4  
06_02_0214 + 13141213-13143741                                         29   3.2  
02_02_0218 - 7975237-7975934,7976896-7977721                           28   7.4  
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826...    28   7.4  
10_01_0269 - 2865731-2865752,2866627-2868605                           27   9.8  
03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012...    27   9.8  

>07_03_1278 - 25413432-25413652,25413678-25413769,25413944-25414146
          Length = 171

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 68  LSQLDHSFRSFVRNFVQTIDVSRVFR*PSEFIVHHNGK-TIVSCARF 205
           L  L H     + NFV ++     F   ++FI+HHN   +++ C  F
Sbjct: 84  LDPLSHEEFLHMSNFVSSLYAVNSFTSEAKFIIHHNSNFSLIICTEF 130


>06_02_0214 + 13141213-13143741
          Length = 842

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 252 ACSSNVNPLCNDPFNIRIDTGNSYLFRLENCD 347
           A S+  N L N  +   +D+G SYL R   CD
Sbjct: 284 AASNTTNALFNMTWQFDVDSGFSYLIRFHFCD 315


>02_02_0218 - 7975237-7975934,7976896-7977721
          Length = 507

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 69  SANWITRFGHSFAISCKR*TSLVFSDN 149
           ++ W+T+FG S  +     TSLV  DN
Sbjct: 226 NSTWVTKFGRSAFLRAGNATSLVIEDN 252


>01_06_1758 -
           39681942-39682030,39682115-39682345,39682643-39682679,
           39683604-39683835,39683937-39684022,39684126-39684218,
           39684302-39684465,39684541-39684702,39684783-39684962,
           39685079-39685515,39685614-39685669
          Length = 588

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 335 EAEQIRIPGVDTDIKRIVAQRIHVRRTRPTIHW 237
           EA+++   G +  I++IVAQ   +R  R T++W
Sbjct: 311 EADRMLDMGFEPQIRKIVAQAWLIRPDRQTLYW 343


>10_01_0269 - 2865731-2865752,2866627-2868605
          Length = 666

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 307 SIRILKGSLHSGFTLDEHAQQFTGSLSFTNSA 212
           ++R L G L SG T+ EH++   GS S  NSA
Sbjct: 287 AVRYLVGHLASG-TIQEHSRYSVGSSSSKNSA 317


>03_06_0243 +
           32598782-32598793,32599037-32599123,32601052-32601257,
           32601342-32601453,32601628-32601724,32601815-32601924,
           32601996-32602153,32602559-32602697,32602776-32602892,
           32603084-32603140,32603280-32603351,32603617-32603736,
           32603818-32603983,32604067-32604188,32604373-32604447,
           32604636-32604775,32604860-32604922,32605002-32605065,
           32605161-32605296,32605401-32605474,32605570-32605664,
           32605761-32605792,32606344-32606474,32606595-32606827,
           32606916-32607723,32607815-32607967
          Length = 1192

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 301 RILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKT 200
           RI +  LH+ +T D  AQ+F   L + +S R KT
Sbjct: 343 RIHEMVLHNKYTDDRFAQEFGIKLKYHDSGREKT 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,789,799
Number of Sequences: 37544
Number of extensions: 316957
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)