Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0963
(549 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.51
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 29 2.0
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si... 29 2.7
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 4.7
At3g62370.1 68416.m07006 expressed protein 28 4.7
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 4.7
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 6.2
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 6.2
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 6.2
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 6.2
At4g39070.1 68417.m05533 zinc finger (B-box type) family protein... 27 8.3
At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine... 27 8.3
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si... 27 8.3
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 0.51
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 312 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 166
LG +H PA +I+R P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 182 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 72
A+ + SP+N+ L S SS +D P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141
>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 545
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 415 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 299
+P SNS P +VL + A + GD H TT+H W+ET
Sbjct: 5 LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 276 DRAPLPPNRVSNETMKVVVFQRRSRET 196
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 400 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 305
N+ PG + P G NG +RF H+ ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 327 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 190
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 267 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 157
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 267 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 157
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 194 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 87
SPT + + SP A ++ + +S P +SPK P P++
Sbjct: 41 SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 315 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 220
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
salt-tolerance protein - Arabidopsis thaliana,
PID:e224078
Length = 242
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 505 DQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSP 392
D+A+ C R V +LA HLR+SLT P ++P
Sbjct: 20 DEAALCNGCDRHVHFANKLAGKHLRFSLTS-PTFKDAP 56
>At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine
aminohydrolase, putative identical to cytidine deaminase
homolog DesA [Arabidopsis thaliana] GI:4836443, cytidine
deaminase 8 (CDA8) [Arabidopsis thaliana] GI:5080714;
similar to cytidine deaminase (CDD) [Arabidopsis
thaliana] GI:3046700; contains Pfam profile PF00383:
Cytidine and deoxycytidylate deaminase zinc-binding
Length = 293
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 532 AVPMR--TEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVP 410
A PMR H++ S+ F P+ +S L A+ H R ++ P
Sbjct: 2 AQPMRFMLNHIETESYGAFTPQNLSPLINRAIPHTRAQISGSP 44
>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 429
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 351 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 226
TA + T+ T+G + PA I L P+R++ + + +
Sbjct: 18 TAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSM 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,160,201
Number of Sequences: 28952
Number of extensions: 285727
Number of successful extensions: 865
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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