Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0961
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    29   0.52 
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   8.5  

>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 25/77 (32%), Positives = 41/77 (53%)
 Frame = +2

Query: 218 LTPGVVAFFPYLFTGSLRGCSRYA*MGR*AHKLNPSEFTNTSPSKSRIYHRIGIATY*VD 397
           LT  +V +F  +F  +L+  +R +  GR   ++  S F+ TSPS+ +I+HR   +    D
Sbjct: 278 LTFFIVVYF--IFGYALKPAARVSRTGR---RVFSSPFSKTSPSRWKIFHRFTSSNEKYD 332

Query: 398 QKLTARNSVGCESIYGL 448
           Q  T  +S+   S Y L
Sbjct: 333 Q--TRSDSLPFMSDYDL 347


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 497 SLSSSKLVNYDEEFDELTH 441
           SLSSS+L+N   ++DE  H
Sbjct: 332 SLSSSELINISRDWDERLH 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,006
Number of Sequences: 5004
Number of extensions: 43432
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)