Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0961
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z81052-6|CAB02874.1|  336|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y59H11AR.2b protein.
          Length = 1111

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 232 CRFFPLSIHW*PKRLFQIR 288
           C  F L +HW PKRL Q R
Sbjct: 59  CGIFRLFLHWFPKRLIQFR 77


>AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical
           protein Y59H11AR.2a protein.
          Length = 1127

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 232 CRFFPLSIHW*PKRLFQIR 288
           C  F L +HW PKRL Q R
Sbjct: 75  CGIFRLFLHWFPKRLIQFR 93


>Z81052-6|CAB02874.1|  336|Caenorhabditis elegans Hypothetical
           protein D2023.7 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 91  GRNSQGGVNYPYGLIITCSPGDP 23
           G N++   N P+   ITC+PG P
Sbjct: 136 GENAEDSQNAPFNGCITCAPGKP 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,926,131
Number of Sequences: 27780
Number of extensions: 243881
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)