Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0958
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   1.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   4.5  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   4.5  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    25   5.9  

>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 180 STIAKLFSISINCKTLCIY 236
           ST  KLFS   +C+ +C+Y
Sbjct: 95  STFKKLFSFGAHCQNMCLY 113


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 308  FIYFLINCRNLGIVPIPM 255
            F+Y L  C  LG++PIP+
Sbjct: 956  FVYALYACFYLGLIPIPV 973


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 231 IYYYLFT*HWYWYYP 275
           +YYY     W WYYP
Sbjct: 626 LYYYQGCPSWTWYYP 640


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 350 LFEKIGNGINFKV 312
           +FEK+GNG+N K+
Sbjct: 63  VFEKVGNGLNLKM 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,500,233
Number of Sequences: 5004
Number of extensions: 24107
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)