Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0958
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93397-1|CAB07719.3|  550|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF498370-1|AAN65376.1|  550|Caenorhabditis elegans GABA-A recept...    27   9.2  

>Z93397-1|CAB07719.3|  550|Caenorhabditis elegans Hypothetical
           protein ZC482.1 protein.
          Length = 550

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -1

Query: 164 NTLDAINLLQFTFCYIFIVIIFWRFYVFIRS 72
           N +D  + + F  C+I   + +W +Y+ + S
Sbjct: 520 NLIDKYSRVVFPVCFIVFNLFYWSYYMMVPS 550


>Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical
           protein F08A10.2 protein.
          Length = 326

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 176 LVLGNTLDAINLLQFTFCYIFIVIIFWRFYVFI 78
           + + NT+  I+L  F+  Y+F + I +  YV++
Sbjct: 8   ITIPNTVAGISLFIFSAIYLFSLFIMFPIYVYV 40


>AF498370-1|AAN65376.1|  550|Caenorhabditis elegans GABA-A receptor
           subunit protein.
          Length = 550

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -1

Query: 164 NTLDAINLLQFTFCYIFIVIIFWRFYVFIRS 72
           N +D  + + F  C+I   + +W +Y+ + S
Sbjct: 520 NLIDKYSRVVFPVCFIVFNLFYWSYYMMVPS 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,311,945
Number of Sequences: 27780
Number of extensions: 135395
Number of successful extensions: 226
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)