Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0958
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   1.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   2.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   2.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   2.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   2.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.9  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -1

Query: 302 YFLINCRNLGIVP 264
           ++L++CRN+G VP
Sbjct: 118 FWLMDCRNIGAVP 130


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 6/27 (22%), Positives = 15/27 (55%)
 Frame = -1

Query: 161 TLDAINLLQFTFCYIFIVIIFWRFYVF 81
           T+D  + + F   ++  +I++W   +F
Sbjct: 361 TIDIYSRIGFPILFMLFIILYWPILLF 387


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -1

Query: 158 LDAINLLQFTFCYIFIVIIFWRFYVF 81
           +D I+ + F   + F  + +W  Y+F
Sbjct: 415 IDVISRIFFPIVFAFFNLAYWSTYLF 440


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -1

Query: 158 LDAINLLQFTFCYIFIVIIFWRFYVF 81
           +D I+ + F   + F  + +W  Y+F
Sbjct: 415 IDVISRIFFPIVFAFFNLAYWSTYLF 440


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 383 NFNYYEQNYKY 415
           N+NY   NYKY
Sbjct: 321 NYNYNNNNYKY 331


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 164 NTLDAINLLQFTFCYIFIVIIFWRFYV 84
           N +D  + + F   ++    I+W FYV
Sbjct: 462 NIIDKYSRIIFPVSFMLFNAIYWIFYV 488


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 6/27 (22%), Positives = 15/27 (55%)
 Frame = -1

Query: 158 LDAINLLQFTFCYIFIVIIFWRFYVFI 78
           +D  + + F  C++   +++W  Y+ I
Sbjct: 404 IDKYSRIVFPVCFVCFNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 6/27 (22%), Positives = 15/27 (55%)
 Frame = -1

Query: 158 LDAINLLQFTFCYIFIVIIFWRFYVFI 78
           +D  + + F  C++   +++W  Y+ I
Sbjct: 404 IDKYSRIVFPVCFVCFNLMYWIIYLHI 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,205
Number of Sequences: 438
Number of extensions: 1768
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)