Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0957
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    29   0.49 
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    25   7.9  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   7.9  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +3

Query: 237 LYLLAELKT-ISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKIERHIMKSV 413
           +++L ELK    +KV      + PP +         PI++D+G+  +E+  I  H+++  
Sbjct: 16  VWMLEELKVPYEIKVYDRVDGRAPPAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKY 75

Query: 414 PGGHNLFVQDKEVASL 461
             G +    +++VA L
Sbjct: 76  --GPSFKPSEEDVAEL 89


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 303 PPDFRTNFEATHP 341
           PPD R NFE T P
Sbjct: 98  PPDHRPNFELTEP 110


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 222 PDRTDRRPFVFHRSSMPLL*ARS 154
           P  T+  PF   RSSMPL+ A S
Sbjct: 159 PIATEHDPFAHLRSSMPLVMANS 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,116
Number of Sequences: 5004
Number of extensions: 42795
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)