Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0957
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0110 + 12432562-12432801,12432811-12433419 28 3.4
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 28 4.5
11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458 27 6.0
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 7.9
11_06_0412 - 23235670-23236512,23236804-23237838 27 7.9
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678... 27 7.9
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 27 7.9
02_02_0532 + 11227074-11227349,11227567-11227969,11228228-112285... 27 7.9
>09_03_0110 + 12432562-12432801,12432811-12433419
Length = 282
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Frame = -1
Query: 196 RLPSIVDAFIIS--SIS-GTSPLAVPFSAISSDIVI 98
R+PS+ ++++ IS G +PLA+P SA SS +VI
Sbjct: 124 RIPSVPTFYVVALTGISVGGAPLAIPPSAFSSGMVI 159
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 75 LLNSSVS*ITMSDEIAENGTANGDVPEIELIIKASTID 188
+ N V + ++DEI N +VP+ L+ AST+D
Sbjct: 525 IYNEQVRDLLVNDEIRNNSQNGLNVPDASLVCVASTMD 562
>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
Length = 619
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 359 IVDQYGRVCRFEVGAEIWGRLLHVH 285
++ + G+ C +E+ AE+WG L+ VH
Sbjct: 531 LIKKEGQACLWEILAEVWGHLI-VH 554
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 150 PEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISL 272
P+I L I A G+ +FC++Y + YLL + +TI L
Sbjct: 433 PQIPLYITAMDKTSVASGSLVFCKDYAV-RYLLDQNRTIKL 472
>11_06_0412 - 23235670-23236512,23236804-23237838
Length = 625
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 359 IVDQYGRVCRFEVGAEIWGRLLHVH 285
IV++ CR+E+ AE+W L+ VH
Sbjct: 562 IVNEEDEACRWEILAEVWAHLI-VH 585
>09_06_0134 +
21065104-21065965,21066732-21066961,21067618-21067841,
21067929-21068781
Length = 722
Score = 27.1 bits (57), Expect = 7.9
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -1
Query: 346 MGGCVASKLVRKSGGGFCMSTVVTF---KLIVLSSANRYRSMKYS*QNRQAPFRLPSIVD 176
MG C AS+L GGG C V K ++ ++A+R ++ + A R S+ D
Sbjct: 1 MGNCAASRLAGGGGGGGCGDPVAVCRDRKRLIKAAADRRFALAGAHAAYAAALR--SVAD 58
Query: 175 AFIISSISGTSPLAV 131
A + T+P +
Sbjct: 59 AVDVFVARHTAPAPI 73
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -3
Query: 413 HGL-HDVPFDFLVLKYRQPIVDQYGRVCRFEVGAEIWGRL--LHVHCCH 276
HG+ H + F + + ++D YG+ C F+ I+ + + + CC+
Sbjct: 1020 HGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCN 1068
>02_02_0532 +
11227074-11227349,11227567-11227969,11228228-11228506,
11228736-11228838,11228932-11229013,11229260-11229370,
11229621-11229691,11229791-11229803
Length = 445
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2
Query: 308 RFPHQLRSDTPAHTDRQWAGDT*ERENRTAHHEVRARG 421
RFPH+L S A QWA + E E R A + R RG
Sbjct: 62 RFPHRLGSGGYAPKVAQWAKE--EEEMRKAGLQGRVRG 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,546,535
Number of Sequences: 37544
Number of extensions: 314310
Number of successful extensions: 781
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -