Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0957
(484 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12950| Best HMM Match : GST_C (HMM E-Value=6.7) 42 3e-04
SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016) 31 0.66
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.87
SB_26019| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-29) 30 0.87
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 29 1.5
SB_9469| Best HMM Match : IRK (HMM E-Value=0) 28 4.6
SB_14261| Best HMM Match : ig (HMM E-Value=0) 28 4.6
SB_28046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_19182| Best HMM Match : ResIII (HMM E-Value=0.46) 27 8.1
>SB_12950| Best HMM Match : GST_C (HMM E-Value=6.7)
Length = 253
Score = 41.9 bits (94), Expect = 3e-04
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +3
Query: 135 ANGDVPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDF 314
A +P +EL +KAST+D + GA + C M + LK + +K VD K +
Sbjct: 2 AEETIPGVELFVKASTLDCQSLGADIQCHRIMM----MFALKGLPIKTFNVDTIK-KTNV 56
Query: 315 RTNFE-ATHPPILIDNGLAILEN-EKIERHIMK 407
+ +F P + +DNG +L++ ++IER K
Sbjct: 57 QLHFPYKNFPTLTLDNGAEVLDDLDEIERRFEK 89
>SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016)
Length = 800
Score = 30.7 bits (66), Expect = 0.66
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = -1
Query: 298 FCMSTVVTFKLIVLSSANRYRSMKYS*QNRQAPF-RLPSIVDA--FIISSISGTSPLAVP 128
FC VV LI L+ ++RY M +PF LPS + + +S+ G+ + P
Sbjct: 271 FCEDRVVNEHLIALAKSDRYLRMPLP----LSPFLTLPSPISSPEHRMSTGGGSEIMRSP 326
Query: 127 FSAISSDIVI*ETLEFSKEVP 65
F A + DI I E ++F+K P
Sbjct: 327 FQAEAKDITIAE-IDFTKLSP 346
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 30.3 bits (65), Expect = 0.87
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -1
Query: 226 YS*QNRQAPFRLPSIVDAFIISSISGTSPLAVPFSAISSDI 104
+S Q APF LPS +F SS PL+ FS S+DI
Sbjct: 2922 HSTQPANAPFTLPSTSRSFNTSSPPSPKPLSSYFSRSSTDI 2962
>SB_26019| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-29)
Length = 438
Score = 30.3 bits (65), Expect = 0.87
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -1
Query: 343 GGCVASKLVRKSGGGFCMSTVVTFKL--IVLSSANRYRSMKYS*QNRQAPFRLPSIVDAF 170
GGC A +L + G + +TVVT KL I+ SSA R++ + Q+ + R+
Sbjct: 212 GGCAARRLSWEFYGNYDNNTVVTHKLTPIISSSAIRFQPRQ---QHSRVAMRVEIYTYGI 268
Query: 169 IISSISGTSPLAVPFSAISS 110
+ S G + VP I+S
Sbjct: 269 ALPSDLGIASGEVPDDKITS 288
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 258 KTISLKVTTVDM-QKPPPDFRTNFEATHPPILIDNGLAILENEKIERHIMK 407
+T SL T+ + Q P +FR H +L+ N + +++NEK+ + + K
Sbjct: 3896 ETFSLTDETIAIRQLTPVEFRVLHLLIHSLLLMGNAINLIDNEKLAKFLFK 3946
>SB_9469| Best HMM Match : IRK (HMM E-Value=0)
Length = 520
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = -1
Query: 340 GCVASKLVRKSGGGFCMSTVVTFKLIVLSSANRYRSMKYS*QNRQAPFRLPSIVDAFIIS 161
GCV + GG +C+ V +F L S ++ Y RQ P + I
Sbjct: 151 GCVWYLITYLRGGNYCVHNVESFVTAFLFSLETQTTIGYG--GRQISGECPEAIILLNIQ 208
Query: 160 SISG 149
S+SG
Sbjct: 209 SLSG 212
>SB_14261| Best HMM Match : ig (HMM E-Value=0)
Length = 1337
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 204 ACLFCQEYFMDLYLLAELKTISLKV 278
ACL+ QEYF D+ LL + I+ +V
Sbjct: 1264 ACLWRQEYFNDILLLTDNNPITTRV 1288
>SB_28046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 337 CVASKLVRKSGGGFCMSTVVTFKLIVLSSANRYRSMKY 224
C +K G GF +T VT K+I+ + R M+Y
Sbjct: 98 CSRAKKSTVKGAGFLKATEVTLKIILRMTLTRSFGMRY 135
>SB_19182| Best HMM Match : ResIII (HMM E-Value=0.46)
Length = 577
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 308 RFPHQLRSDTPAHTDRQWAGDT*ERENRT--AHHEVRARGTQPIRAGQGG 451
++ + R P H + WAGD + E+ A + R T PI G+ G
Sbjct: 84 KYKTKTRITIPCHNNHAWAGDFQKHEDLAVWACYSHARRQTVPIGTGRSG 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,455,500
Number of Sequences: 59808
Number of extensions: 352634
Number of successful extensions: 825
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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