Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0957
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    31   0.31 
At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger) fa...    30   0.94 
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ...    29   2.2  
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ...    29   2.2  
At1g10190.1 68414.m01149 expressed protein similar to hypothetic...    29   2.2  
At5g16710.1 68418.m01956 dehydroascorbate reductase, putative St...    28   2.9  
At4g15050.1 68417.m02311 expressed protein  contains Pfam profil...    28   2.9  
At2g27035.1 68415.m03248 plastocyanin-like domain-containing pro...    28   3.8  
At2g23100.1 68415.m02756 DC1 domain-containing protein contains ...    27   5.0  
At1g72960.1 68414.m08438 root hair defective 3 GTP-binding (RHD3...    27   8.8  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +3

Query: 222 EYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKIE-RH 398
           +Y MD+Y  A  + I+ K TT+++ K   + +   E     +  +  +AI ENEK + R 
Sbjct: 300 KYTMDMYNSACKEAIAAKKTTIELHKWKEERKHKLE--EAILAKEAAMAIAENEKAKSRA 357

Query: 399 IMKSVPGGHNLFVQDKEVASLIE 467
            M+++   H +   + +    IE
Sbjct: 358 AMEALEAAHRMAETEAQKRKQIE 380


>At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 199

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 186 DGRRKGACLFCQEYFMD-LYLLAELKTISL 272
           +GRR+GAC++C   F++ LY   EL    L
Sbjct: 24  EGRREGACIYCGNTFLERLYENVELSPFDL 53


>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 599

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -3

Query: 209 TGALSSSIDRRC---LYYKLDLRNVSISCTIFC 120
           T  + S  + RC   +Y+K+D+RNV  SC + C
Sbjct: 566 TRPVCSRCEDRCQGSIYFKVDVRNVCASCLLKC 598


>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 767

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 207 CLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILI 353
           C  C EY MD Y        ++ V+   ++KPPP    +    H   LI
Sbjct: 278 CYCCDEYLMDYYYYCSSCDFAMNVSC--LEKPPPVLSIDHPKWHQHPLI 324


>At1g10190.1 68414.m01149 expressed protein similar to hypothetical
           protein GB:CAB10284 contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 396

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 301 RPQISAPTSKRHTRPY*STMGWRYLRTRKSNGTS 402
           +P    P+ K HT  Y     W+ +R RK+N T+
Sbjct: 69  QPAFDHPSMKNHTYHYKMRPIWKRMRERKTNNTN 102


>At5g16710.1 68418.m01956 dehydroascorbate reductase, putative
           Strong similarity to dehydroascorbate reductase
           [Spinacia oleracea] gi:10952512 gb:AAG24945
          Length = 258

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 156 IELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDF 314
           +E+ +KAS     + G C FCQ+    + L  E K +   +  VD+   P  F
Sbjct: 49  LEICVKASITTPNKLGDCPFCQK----VLLTMEEKNVPYDMKMVDLSNKPEWF 97


>At4g15050.1 68417.m02311 expressed protein  contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 396

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 301 RPQISAPTSKRHTRPY*STMGWRYLRTRKSNGTS 402
           +P    P+ K HT  Y     W+ +R RK+N T+
Sbjct: 69  QPAFDHPSMKNHTYHYKMRPIWKGMRERKTNNTN 102


>At2g27035.1 68415.m03248 plastocyanin-like domain-containing
           protein low similarity to SP:P80728 Mavicyanin
           {Cucurbita pepo}; contains Pfam profile PF02298:
           Plastocyanin-like domain
          Length = 163

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 255 LKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGL 365
           LK + L +T   + +PPP   TNF +T  P++  N +
Sbjct: 115 LKGMKLAITV--LPQPPPSAPTNFTSTTTPLIPPNAI 149


>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 711

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +3

Query: 201 GACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPIL 350
           G C  CQ+ F D+Y    +   SL  T     KPPP   T+ + +H  IL
Sbjct: 223 GKCKCCQKRFEDIYYHCSVCNFSLNFTCT--IKPPPLTITHLK-SHSHIL 269


>At1g72960.1 68414.m08438 root hair defective 3 GTP-binding (RHD3)
           family protein contains Pfam profile: PF05879 root hair
           defective 3 GTP-binding protein (RHD3)
          Length = 748

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 420 PLARTS*CAVRFSRSQVSPAHCRSVW 343
           PLA ++   V  SR+ ++P  C+S+W
Sbjct: 582 PLASSTWDEVPSSRTLITPVQCKSIW 607


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,257,569
Number of Sequences: 28952
Number of extensions: 235902
Number of successful extensions: 551
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)