Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0956
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00700.1 68417.m00096 C2 domain-containing protein contains I...    29   1.7  
At5g54080.2 68418.m06733 homogentisate 1,2-dioxygenase / homogen...    29   2.2  
At5g54080.1 68418.m06732 homogentisate 1,2-dioxygenase / homogen...    29   2.2  
At4g35760.1 68417.m05076 expressed protein                             27   9.0  

>At4g00700.1 68417.m00096 C2 domain-containing protein contains
            INTERPRO:IPR000008 C2 domain
          Length = 1006

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 68   FGLVILKFTQYFMHHPRARHRV 3
            F LV L    YFM HP+ RHR+
Sbjct: 966  FKLVALLSGYYFMRHPKLRHRI 987


>At5g54080.2 68418.m06733 homogentisate 1,2-dioxygenase /
           homogentisicase/homogentisate oxygenase / homogentisic
           acid oxidase (HGO) identical to SP|Q9ZRA2 Homogentisate
           1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase)
           (Homogentisate oxygenase) (Homogentisic acid oxidase)
           {Arabidopsis thaliana}; contains Pfam profile PF04209:
           homogentisate 1,2-dioxygenase
          Length = 461

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 514 YTPSKYFLSYTCPYYPVLTKHGLSSL 437
           Y P KY L   CPY  VL  HG  S+
Sbjct: 278 YVPYKYDLKKFCPYNTVLLDHGDPSI 303


>At5g54080.1 68418.m06732 homogentisate 1,2-dioxygenase /
           homogentisicase/homogentisate oxygenase / homogentisic
           acid oxidase (HGO) identical to SP|Q9ZRA2 Homogentisate
           1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase)
           (Homogentisate oxygenase) (Homogentisic acid oxidase)
           {Arabidopsis thaliana}; contains Pfam profile PF04209:
           homogentisate 1,2-dioxygenase
          Length = 461

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 514 YTPSKYFLSYTCPYYPVLTKHGLSSL 437
           Y P KY L   CPY  VL  HG  S+
Sbjct: 278 YVPYKYDLKKFCPYNTVLLDHGDPSI 303


>At4g35760.1 68417.m05076 expressed protein
          Length = 376

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 97  AYLLFN*NK*FSGSLCIYCVVKKY-DFSTIF 186
           AY L+  +   SGS C+YC+V  +  FS  F
Sbjct: 180 AYFLYILSTKLSGSSCLYCLVSAFLSFSLFF 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,498,846
Number of Sequences: 28952
Number of extensions: 177429
Number of successful extensions: 272
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)