Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0954
(492 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 178 5e-44
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 177 1e-43
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 165 4e-40
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 165 5e-40
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 159 2e-38
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 159 2e-38
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 159 4e-38
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 157 1e-37
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 152 5e-36
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 151 8e-36
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 136 2e-31
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 136 3e-31
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 136 3e-31
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 136 3e-31
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 135 4e-31
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 134 1e-30
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 125 5e-28
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 125 6e-28
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 123 2e-27
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 123 2e-27
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 119 3e-26
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 119 3e-26
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 118 5e-26
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 116 3e-25
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 111 8e-24
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 106 3e-22
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 106 3e-22
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 106 3e-22
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 106 3e-22
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 100 2e-20
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 99 5e-20
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 98 1e-19
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 97 2e-19
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 97 2e-19
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 93 2e-18
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 88 9e-17
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 85 8e-16
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 83 4e-15
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 80 2e-14
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 79 4e-14
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 79 7e-14
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 75 9e-13
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 75 9e-13
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 73 5e-12
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 72 6e-12
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 71 1e-11
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 70 2e-11
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 69 6e-11
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 68 1e-10
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 68 1e-10
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 68 1e-10
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 68 1e-10
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 67 2e-10
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 67 2e-10
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 67 2e-10
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 66 4e-10
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 65 7e-10
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 64 2e-09
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 64 2e-09
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 63 3e-09
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 63 4e-09
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 63 4e-09
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 61 2e-08
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 59 5e-08
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 59 5e-08
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 59 5e-08
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 58 1e-07
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 56 3e-07
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 56 4e-07
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 56 4e-07
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 54 1e-06
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 54 2e-06
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 50 3e-05
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 50 3e-05
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 48 9e-05
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 48 2e-04
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 47 2e-04
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 47 2e-04
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 46 3e-04
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 46 6e-04
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 46 6e-04
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 46 6e-04
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 44 0.001
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 44 0.001
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 44 0.002
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 42 0.006
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 41 0.017
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 40 0.023
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 39 0.053
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 38 0.12
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 37 0.21
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 37 0.28
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 37 0.28
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 36 0.65
UniRef50_Q6EGM1 Cluster: Cytochrome c oxidase subunit I; n=1; Br... 35 0.86
UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;... 33 4.6
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 32 6.0
UniRef50_Q8ID15 Cluster: Putative uncharacterized protein MAL13P... 32 6.0
UniRef50_Q0BZ17 Cluster: Amidohydrolase family/endoribonuclease ... 32 8.0
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 178 bits (434), Expect = 5e-44
Identities = 95/157 (60%), Positives = 101/157 (64%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
+HKDIGTLY AELG PGSLIGDDQIYNTIVTAHA
Sbjct: 8 NHKDIGTLYFIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMV 67
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVPL+LGAPD+AFPR+NN+ F IVENGAGTG TVYP
Sbjct: 68 MPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYP 127
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PLSSNIAH G SVDLAIFSLHLAGISSI+GAINFITT
Sbjct: 128 PLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITT 164
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 177 bits (430), Expect = 1e-43
Identities = 92/151 (60%), Positives = 106/151 (70%)
Frame = -3
Query: 490 VVIKLIAPIIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNIRE 311
VV+K AP I+E PAKC+EKI STD P CAI SGG TVHPVP P STI L + ++E
Sbjct: 68 VVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIPLNKSKVKE 127
Query: 310 GGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*I*SSPI 131
GG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+ L I S PI
Sbjct: 128 GGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTL-IWSFPI 186
Query: 130 NDPGFPNSARIKSLKDVPIIPDQIPKIKYNV 38
PG PNSARIKSL DVP +P PK+KYNV
Sbjct: 187 KLPGCPNSARIKSLSDVPTMPAHAPKMKYNV 217
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 165 bits (402), Expect = 4e-40
Identities = 85/128 (66%), Positives = 91/128 (71%)
Frame = +3
Query: 108 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 287
ELG PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD+AFPR+NN
Sbjct: 13 ELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNN 72
Query: 288 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSII 467
+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISSI+
Sbjct: 73 MSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSIL 132
Query: 468 GAINFITT 491
GAINFITT
Sbjct: 133 GAINFITT 140
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 165 bits (401), Expect = 5e-40
Identities = 87/157 (55%), Positives = 98/157 (62%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
+HKDIGTLY AELG PG+L+GDDQIYN IVTAHA
Sbjct: 12 NHKDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMV 71
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYP
Sbjct: 72 MPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYP 131
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL+ N+AH G SVDLAIFSLHLAGISSI+GAINFITT
Sbjct: 132 PLAGNLAHAGASVDLAIFSLHLAGISSILGAINFITT 168
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 159 bits (387), Expect = 2e-38
Identities = 83/157 (52%), Positives = 95/157 (60%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
+HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 11 NHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMV 70
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYP
Sbjct: 71 MPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYP 130
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL+ N+AH G SVDL IFSLHLAG+SSI+GAINFITT
Sbjct: 131 PLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITT 167
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 159 bits (387), Expect = 2e-38
Identities = 83/157 (52%), Positives = 95/157 (60%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
+HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 11 NHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMV 70
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYP
Sbjct: 71 MPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYP 130
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL+ N+AH G SVDL IFSLHLAG+SSI+GAINFITT
Sbjct: 131 PLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITT 167
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 159 bits (385), Expect = 4e-38
Identities = 82/156 (52%), Positives = 94/156 (60%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 203
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 1 HKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 60
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N L+PL++GAPD+AFPR+NN+ F +E GAGTG TVYPP
Sbjct: 61 PIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPP 120
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
L+ N+AH G SVDL IFSLHLAGISSI+GAINFITT
Sbjct: 121 LAGNLAHAGASVDLTIFSLHLAGISSILGAINFITT 156
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 157 bits (381), Expect = 1e-37
Identities = 81/157 (51%), Positives = 95/157 (60%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
+HKDIGTLY AELG PG+L+G+D IYN IVTAHA
Sbjct: 11 NHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMV 70
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVPL++GAPD+AFPR+NN+ F +VE GAGTG TVYP
Sbjct: 71 MPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYP 130
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL+ N +H G SVDL IFSLHLAG+SSI+GAINFITT
Sbjct: 131 PLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITT 167
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 152 bits (368), Expect = 5e-36
Identities = 78/157 (49%), Positives = 94/157 (59%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
+HKDIG+LY EL +PGS++GDD +YN IVTAHA
Sbjct: 12 NHKDIGSLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLV 71
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N VPL++GAPD+AFPR+NNI F +VE GAGTG TVYP
Sbjct: 72 MPTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYP 131
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL+S AH G SVD+AIFSLHLAG+SSI+GA+NFITT
Sbjct: 132 PLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITT 168
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 151 bits (366), Expect = 8e-36
Identities = 75/128 (58%), Positives = 86/128 (67%)
Frame = +3
Query: 108 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 287
ELG PGS IG+DQ+YN +VTAHA N LVPL+LGAPD+AFPR+NN
Sbjct: 23 ELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNN 82
Query: 288 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSII 467
+ F VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SSI+
Sbjct: 83 MSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSSIL 142
Query: 468 GAINFITT 491
GA+NFITT
Sbjct: 143 GAVNFITT 150
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 136 bits (330), Expect = 2e-31
Identities = 72/159 (45%), Positives = 90/159 (56%), Gaps = 2/159 (1%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXX 194
+HKDIGTLY EL PG I G+ Q+YN ++TAHA
Sbjct: 12 NHKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFF 71
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
N VP+++GAPD+AFPR+NNI F +VE G+GTG TV
Sbjct: 72 MVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTV 131
Query: 375 YPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
YPPLS +H G +VDLAIFSLHL+G+SSI+G+INFITT
Sbjct: 132 YPPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITT 170
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 136 bits (328), Expect = 3e-31
Identities = 76/157 (48%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PLS +H G SVDLAIFSLHL+GISS++GA+NFITT
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITT 167
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 136 bits (328), Expect = 3e-31
Identities = 76/157 (48%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PLS +H G SVDLAIFSLHL+GISS++GA+NFITT
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITT 167
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 136 bits (328), Expect = 3e-31
Identities = 76/157 (48%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PLS +H G SVDLAIFSLHL+GISS++GA+NFITT
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITT 167
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 135 bits (327), Expect = 4e-31
Identities = 68/128 (53%), Positives = 82/128 (64%)
Frame = +3
Query: 108 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 287
ELG PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD++FPR+NN
Sbjct: 24 ELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNN 83
Query: 288 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSII 467
+ F + G GTG TVYPPLS + H G SVDL IFSLHLAG SSI+
Sbjct: 84 MSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASSIM 143
Query: 468 GAINFITT 491
GA+NFITT
Sbjct: 144 GAVNFITT 151
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 134 bits (324), Expect = 1e-30
Identities = 71/159 (44%), Positives = 91/159 (57%), Gaps = 2/159 (1%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 194
+HKDIGTLY EL P + L+G+ QIYN ++TAHA
Sbjct: 17 NHKDIGTLYLIFGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFF 76
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
N LVP+++G+PD+AFPR+NNI F +VE G GTG TV
Sbjct: 77 MVMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTV 136
Query: 375 YPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
YPPLSS +H G +VDLAIFSLH++G SSI+GA+NFI+T
Sbjct: 137 YPPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFIST 175
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 125 bits (302), Expect = 5e-28
Identities = 68/156 (43%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 203
KDIG LY EL PG I D+Q+YN+I+TAHA
Sbjct: 13 KDIGVLYLIYALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVM 72
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N L+PL LG PD+ FPR+NNI + +ENG GTG T+YPP
Sbjct: 73 PALIGGFGNFLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPP 132
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
LS +H G SVDLAIF LHL+GISS++GA+NF+TT
Sbjct: 133 LSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTT 168
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 125 bits (301), Expect = 6e-28
Identities = 69/160 (43%), Positives = 88/160 (55%), Gaps = 5/160 (3%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 203
KDIGTLY EL PG I ++Q+YN+I+TAHA
Sbjct: 41 KDIGTLYLIFALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVM 100
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV--- 374
N L+PL++G PD+AFPR+NNI F I+E G GTG T+
Sbjct: 101 PALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKD 160
Query: 375 -YPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
YPPLS +H G SVDLAIF+LHL+G+SS++G+INFITT
Sbjct: 161 KYPPLSGLQSHSGPSVDLAIFALHLSGVSSLLGSINFITT 200
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 123 bits (296), Expect = 2e-27
Identities = 71/157 (45%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 12 KDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLV 71
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PLSS AH G SVDLAIF+LHL ISS++GAINFI T
Sbjct: 132 PLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVT 168
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 123 bits (296), Expect = 2e-27
Identities = 71/157 (45%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 12 KDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLV 71
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PLSS AH G SVDLAIF+LHL ISS++GAINFI T
Sbjct: 132 PLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVT 168
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 119 bits (287), Expect = 3e-26
Identities = 68/157 (43%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDI +Y EL PGS L G+ Q++N +V HA
Sbjct: 12 KDISIMYFMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLA 71
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N ++PL++GA D++FPRIN+I F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PLSS AH G SVDLAIFSLHL ISS++GAINFI T
Sbjct: 132 PLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVT 168
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 119 bits (287), Expect = 3e-26
Identities = 62/156 (39%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 203
KDI LY EL PG I D+Q+YN+I+T+H
Sbjct: 39 KDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVM 98
Query: 204 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 383
N L+P+++G PD+AFPR+NN+ + I+ENG GTG T+YPP
Sbjct: 99 PALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPP 158
Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
LS +H VDL IF LHL+GISS++GAINFI T
Sbjct: 159 LSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIAT 194
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 118 bits (285), Expect = 5e-26
Identities = 67/157 (42%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDI LY EL PG L G++Q++N +V HA
Sbjct: 12 KDIAVLYFLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMV 71
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N ++PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL+S AH G SVDLAIF+LH+ ISS++GAINFI T
Sbjct: 132 PLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVT 168
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 116 bits (279), Expect = 3e-25
Identities = 68/157 (43%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 17 KDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFV 76
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N L+PL+LGA D+AF R+NNI F +VE GAGTG TVY
Sbjct: 77 MPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYF 136
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL+ +H G +VDLAIFSLHL+G SS++GAINFITT
Sbjct: 137 PLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITT 173
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 111 bits (267), Expect = 8e-24
Identities = 64/159 (40%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 194
+HK IG LY EL PG L G+ YN I T H
Sbjct: 13 NHKRIGILYLFFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFV 72
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
N VP+++GAPD++FPR+NN F E G GTG TV
Sbjct: 73 VVMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTV 132
Query: 375 YPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
YPPLSS +H G SVDL IFS HL GI SI+ AINFI T
Sbjct: 133 YPPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICT 171
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 106 bits (254), Expect = 3e-22
Identities = 52/125 (41%), Positives = 74/125 (59%)
Frame = +3
Query: 117 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 296
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 297 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAI 476
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SSI GAI
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 477 NFITT 491
N + T
Sbjct: 181 NLMVT 185
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 106 bits (254), Expect = 3e-22
Identities = 52/125 (41%), Positives = 74/125 (59%)
Frame = +3
Query: 117 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 296
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 297 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAI 476
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SSI GAI
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 477 NFITT 491
N + T
Sbjct: 181 NLMVT 185
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 106 bits (254), Expect = 3e-22
Identities = 52/125 (41%), Positives = 74/125 (59%)
Frame = +3
Query: 117 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 296
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 297 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAI 476
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SSI GAI
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 477 NFITT 491
N + T
Sbjct: 181 NLMVT 185
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 106 bits (254), Expect = 3e-22
Identities = 52/125 (41%), Positives = 74/125 (59%)
Frame = +3
Query: 117 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 296
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 297 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAI 476
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SSI GAI
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 477 NFITT 491
N + T
Sbjct: 181 NLMVT 185
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 100 bits (239), Expect = 2e-20
Identities = 70/177 (39%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-------SLIGD------DQIY--- 152
+HKDIGTLY AEL PG + D DQ Y
Sbjct: 35 NHKDIGTLYLIFAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYHLW 94
Query: 153 NTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXX 332
N ++TAH N VP+++GAPD+AFPR+NNI F
Sbjct: 95 NVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALLLG 154
Query: 333 XXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
V NGAGTG TVY PLS++ G +VD+AI SLH+AG SSI+GAINFITT
Sbjct: 155 STFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITT 210
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 99.1 bits (236), Expect = 5e-20
Identities = 52/83 (62%), Positives = 58/83 (69%)
Frame = +3
Query: 243 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 422
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 423 LAIFSLHLAGISSIIGAINFITT 491
LAIFSLH+AG+ SI+GAINFI+T
Sbjct: 64 LAIFSLHMAGVXSILGAINFIST 86
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 97.9 bits (233), Expect = 1e-19
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Frame = +3
Query: 105 AELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 278
A LG L G D ++N ++T H N +PL++GAPD+AFPR
Sbjct: 143 ALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPR 202
Query: 279 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 458
+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G S
Sbjct: 203 LNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGAS 262
Query: 459 SIIGAINFITT 491
SI+G+INFITT
Sbjct: 263 SILGSINFITT 273
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 97.1 bits (231), Expect = 2e-19
Identities = 56/123 (45%), Positives = 65/123 (52%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
+HKD GTL AELG PG+L+GDDQ N IVTAHA
Sbjct: 12 NHKDXGTLXXIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMX 71
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYP
Sbjct: 72 MPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYP 131
Query: 381 PLS 389
PL+
Sbjct: 132 PLA 134
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 96.7 bits (230), Expect = 2e-19
Identities = 51/161 (31%), Positives = 78/161 (48%)
Frame = +3
Query: 9 IRHEDHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXX 188
++ +HKDIGT+Y EL +PG + +Y++I+T HA
Sbjct: 9 LKSVNHKDIGTIYLYMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMI 68
Query: 189 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG* 368
N +PL++ D++ PR+NN+ + G G G
Sbjct: 69 FFFVMPTSIGGLGNWFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGW 128
Query: 369 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
T+YPPLS++ G +DLA+FSLH+AG+SSI G+INF+ T
Sbjct: 129 TMYPPLSNSEFMDGLPIDLAVFSLHMAGMSSIAGSINFLVT 169
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 93.5 bits (222), Expect = 2e-18
Identities = 53/122 (43%), Positives = 65/122 (53%)
Frame = +3
Query: 108 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 287
ELG PGSL+ DDQ+YN +VTAH N LVPL+LGAPD+AFPR+NN
Sbjct: 24 ELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNN 83
Query: 288 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSII 467
+ F + G + PL G SVDLAIF LHLAG+SSI+
Sbjct: 84 MSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSSIL 141
Query: 468 GA 473
G+
Sbjct: 142 GS 143
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 88.2 bits (209), Expect = 9e-17
Identities = 51/159 (32%), Positives = 70/159 (44%), Gaps = 2/159 (1%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 194
+HK IGT Y EL +PG G Q+YN+++T H
Sbjct: 20 NHKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFF 79
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
N ++PL+LGAP++AFPR+N + F + G G+ T
Sbjct: 80 LVMPILIGGFGNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTF 139
Query: 375 YPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
YPPLS S+D I LH GI S++GAINF+ T
Sbjct: 140 YPPLSVE-GQPELSLDTMILGLHTVGIGSLLGAINFMVT 177
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 85.0 bits (201), Expect = 8e-16
Identities = 67/157 (42%), Positives = 80/157 (50%), Gaps = 1/157 (0%)
Frame = +3
Query: 24 HKDIGTL-YXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
HKD GTL + L G +IG QI VTA A
Sbjct: 1 HKDXGTLXFXFXXWSAXFXGXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFV 60
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
L PL +GAP +A PR+ N+ F + G G VYP
Sbjct: 61 MPTLXGGFGXXLXPLXVGAPXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYP 120
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
P SS +AH +VDL IF LHLAGISS +G++NF+ T
Sbjct: 121 PXSSGLAHSSGAVDLGIFXLHLAGISSXLGSMNFLVT 157
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 82.6 bits (195), Expect = 4e-15
Identities = 41/123 (33%), Positives = 59/123 (47%)
Frame = +3
Query: 123 GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 302
G L GD Q YN ++T+H N +P++ G PD+ FPR+NN+ F
Sbjct: 48 GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWM 107
Query: 303 XXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINF 482
+ E G G G T+YP L H + D +F++HL GISSI+ +IN
Sbjct: 108 YLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINL 167
Query: 483 ITT 491
+ T
Sbjct: 168 LGT 170
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 80.2 bits (189), Expect = 2e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +3
Query: 243 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 422
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 423 LAIFS 437
LAI+S
Sbjct: 61 LAIYS 65
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 79.4 bits (187), Expect = 4e-14
Identities = 58/165 (35%), Positives = 77/165 (46%), Gaps = 8/165 (4%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHKDIG LY EL +PG + + YN+++T+H
Sbjct: 93 DHKDIGLLYGAFGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFA 152
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRF--XXXXXXXXXXXXXXIVE-NGAGTG*T 371
N L+PL++GA D+AFPRIN I F I E A TG T
Sbjct: 153 TPIIAAFS-NYLIPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWT 211
Query: 372 VYPPLS-----SNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
+Y PLS N A+ G VDL + LHL+G+S+ +G+INFI T
Sbjct: 212 MYTPLSVGEGMGNQANAG--VDLMLLGLHLSGVSATMGSINFIAT 254
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 78.6 bits (185), Expect = 7e-14
Identities = 50/126 (39%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVP+++GAPD+AFPR+NNI F VE GAGTG TV
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKC 130
Query: 381 PLSSNI 398
LS I
Sbjct: 131 KLSQII 136
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 74.9 bits (176), Expect = 9e-13
Identities = 42/120 (35%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXX 194
+HKDIGTLY EL PG+ I G+ Q+YN ++TAHA
Sbjct: 13 NHKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFF 72
Query: 195 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
N VP+++G+PD+AFPR+NNI F +VE G G+G TV
Sbjct: 73 MVMPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 74.9 bits (176), Expect = 9e-13
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Frame = +3
Query: 147 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 326
+YN I T H N +P++ G+P++A+PRIN+I
Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117
Query: 327 XXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISSIIGAINFITT 491
E G GTG T+YPPLS+++ +VD+ IF L ++G++SI+ ++NFITT
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITT 173
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 72.5 bits (170), Expect = 5e-12
Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 3/160 (1%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDD--QIYNTIVTAHAXXXXX 191
+HK IG Y EL G +I D +IYN + T H
Sbjct: 16 NHKIIGISYLWLAYWFGMIGFYMSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIMVF 75
Query: 192 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 371
N L P++LG D+ +PR+N +E G+GTG T
Sbjct: 76 FNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWT 135
Query: 372 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
+YPPLS+++++ G +D IF L AGI+S + ++NFITT
Sbjct: 136 LYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITT 173
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 72.1 bits (169), Expect = 6e-12
Identities = 48/159 (30%), Positives = 68/159 (42%), Gaps = 2/159 (1%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHKDIG LY EL + +YN ++T+H
Sbjct: 67 DHKDIGILYGVYGTIAFAWGGVSVLLMRTELATSSETLISPSLYNGLLTSHGITMLFLFG 126
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TV 374
N +PL++ A D+AFPRIN I F ++ A T T+
Sbjct: 127 TPMIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTM 185
Query: 375 YPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
Y PLS ++ +VD+ + LHL G+S+ +GAINFI T
Sbjct: 186 YTPLSLQMS--SPAVDMMMLGLHLTGVSATMGAINFIAT 222
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 71.3 bits (167), Expect = 1e-11
Identities = 34/51 (66%), Positives = 40/51 (78%)
Frame = +3
Query: 339 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SSI+GA+ FI+T
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASSIMGAMYFIST 62
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 70.1 bits (164), Expect = 2e-11
Identities = 48/157 (30%), Positives = 65/157 (41%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHK IG LY L +P + +YN +VT H
Sbjct: 109 DHKRIGLLYFVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFL 168
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N +P+ L D+ PR+N++ G G G T+YP
Sbjct: 169 MPILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYP 226
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PLS G VD +FSLHLAG+SS+IG++NFI+T
Sbjct: 227 PLSI-WEGSGFGVDYLMFSLHLAGVSSLIGSVNFIST 262
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 68.9 bits (161), Expect = 6e-11
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 6/162 (3%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI----GDDQIYNTIVTAHAXXXXX 191
HK IG LY EL G I + IYN +T H
Sbjct: 18 HKIIGILYGYMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLF 77
Query: 192 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG* 368
N L+P+++G +++ PR+N I F ++ +G
Sbjct: 78 VFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGW 137
Query: 369 TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISSIIGAINFITT 491
T+YPPLS+ A G ++DL++ +H+ GISS IG++N+ITT
Sbjct: 138 TLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITT 179
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 68.1 bits (159), Expect = 1e-10
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Frame = +3
Query: 150 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 329
Y I T H N L+PL++GA D+AFPR+N F
Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145
Query: 330 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
G AG G T Y PLS+N+ G L + ++ + G+SS +GA+N+ITT
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITT 200
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 67.7 bits (158), Expect = 1e-10
Identities = 43/157 (27%), Positives = 62/157 (39%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHK +G +Y A+L P + D YN I T H
Sbjct: 52 DHKKLGIMYIISAVIMLFRGGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMA 111
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N +VPL +GA D+AFP +NN+ F ++ G T Y
Sbjct: 112 MPFLIGLI-NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYM 170
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL+SN G + + L +AGI +++ INF+ T
Sbjct: 171 PLASNDMSPGPGENYYLLGLQIAGIGTLMTGINFMVT 207
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 67.7 bits (158), Expect = 1e-10
Identities = 46/158 (29%), Positives = 63/158 (39%), Gaps = 1/158 (0%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHK +G +Y AEL PG ++ +N + T H
Sbjct: 37 DHKQLGIMYIIMSFSFFFLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYG 96
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVY 377
N ++PL +GAPD+AFPR+N F + GA G T+Y
Sbjct: 97 TPIVWGFA-NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMY 155
Query: 378 PPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PLS I G D+ I + GI S+ AIN +TT
Sbjct: 156 SPLSDAIHSPGLGSDMWIVGVGATGIGSVASAINMLTT 193
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 67.7 bits (158), Expect = 1e-10
Identities = 47/158 (29%), Positives = 64/158 (40%), Gaps = 1/158 (0%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHKDIG LY +L P S Y VT H
Sbjct: 20 DHKDIGLLYLVTSIAFLLIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFA 79
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVY 377
N +VPL +GA D+AFPR+N + + E+GA G T+Y
Sbjct: 80 SPFAFGLA-NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLY 138
Query: 378 PPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL++ I G +DLA ++ L +S +G INF+ T
Sbjct: 139 APLTARIYTPGIGLDLAALAIFLFSLSVTLGTINFLVT 176
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 67.3 bits (157), Expect = 2e-10
Identities = 47/157 (29%), Positives = 61/157 (38%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHK IG ++ EL PG I D YN T H
Sbjct: 41 DHKRIGLMFLFWVLLFFLVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFM 100
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N ++PL+LGA D+AFPR+N + ++ G TG T Y
Sbjct: 101 IPAIPAVFGNFMLPLMLGAKDVAFPRLNLLSL-YIYLAGAVLALWGMLNGGLDTGWTFYT 159
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
P S AH +V +F + G SSI+ INFI T
Sbjct: 160 PYS---AHTTTTVAPVLFGAFIIGFSSIVTGINFIVT 193
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 67.3 bits (157), Expect = 2e-10
Identities = 47/158 (29%), Positives = 65/158 (41%)
Frame = +3
Query: 18 EDHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXX 197
+DHK IG ++ EL PG I D YN + T H
Sbjct: 33 QDHKRIGVMFLVATTISFALGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLF 92
Query: 198 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 377
N L+P+++GA D+AFP++N + F +V+ GA TG T Y
Sbjct: 93 MIPAIPSGFGNFLLPIMIGAKDVAFPKLNLLSF-YVYLAGAVVALFGMVQGGADTGWTFY 151
Query: 378 PPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
P S+ + V L F L G SSI+ +NFI T
Sbjct: 152 TPYSTTTITKVVPVLLGAFIL---GFSSILTGLNFIVT 186
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 67.3 bits (157), Expect = 2e-10
Identities = 50/157 (31%), Positives = 63/157 (40%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHK IG Y EL P ++YN ++T H
Sbjct: 26 DHKVIGIQYLVTSFLFFFIGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWI 85
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N L+PL++G D+AFPR+N + F V G T YP
Sbjct: 86 VPAGAAFA-NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYP 143
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PLS G +L I SL L G SSI+GAINF+TT
Sbjct: 144 PLSLLSGKWGE--ELWILSLLLVGTSSILGAINFVTT 178
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 66.1 bits (154), Expect = 4e-10
Identities = 47/157 (29%), Positives = 65/157 (41%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
+H D+ LY +L P L D +YN VT H
Sbjct: 8 NHIDVSLLYFSLGIFSALLGMSFSLLFRLQLAFPSILTSD--VYNAFVTLHGLVMVFFAA 65
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N L+P PD+ FPR+N + F ++ + A G T YP
Sbjct: 66 MPTAIGFFANLLIPYHCNLPDLLFPRMNALSFWLMPFSLSL-----LLFSMASAGWTFYP 120
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PLSS SV+ ++FSLHLAGI+S+I + NF+ T
Sbjct: 121 PLSS----LSPSVEFSVFSLHLAGIASLISSCNFLVT 153
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 65.3 bits (152), Expect = 7e-10
Identities = 44/126 (34%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 17 KDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFV 76
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N L+PL+LGA D+AF R+NNI F +VE GAGTG TV
Sbjct: 77 MPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKK 136
Query: 381 PLSSNI 398
SS +
Sbjct: 137 ICSSKM 142
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 64.1 bits (149), Expect = 2e-09
Identities = 40/124 (32%), Positives = 56/124 (45%)
Frame = +3
Query: 120 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 299
PG + D + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 300 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAIN 479
I N T T YPP S N + L +F +HL G SSI A+N
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 480 FITT 491
F+ T
Sbjct: 120 FLVT 123
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 64.1 bits (149), Expect = 2e-09
Identities = 48/160 (30%), Positives = 67/160 (41%), Gaps = 3/160 (1%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
D K IG Y EL P + + D +YN + T H
Sbjct: 35 DAKVIGIQYIATAMLFLLVGGLLAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLFLFL 94
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVY 377
N L+P ++GAPD+AFP++N F G A +G Y
Sbjct: 95 FPILNGFN-NLLIPTMIGAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSY 153
Query: 378 PPLS--SNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PP+S + + H L I ++ L+GISSI+GAINF+TT
Sbjct: 154 PPMSLQNPLGHFINGEFLWILAVALSGISSIMGAINFVTT 193
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 63.3 bits (147), Expect = 3e-09
Identities = 27/37 (72%), Positives = 35/37 (94%)
Frame = +3
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL+S+IAH G SVD+AIFSLHLAG+SSI+G++NF+TT
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTT 108
Score = 35.1 bits (77), Expect = 0.86
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 215 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 340
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 62.9 bits (146), Expect = 4e-09
Identities = 45/158 (28%), Positives = 62/158 (39%), Gaps = 1/158 (0%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXX 197
DHK +G LY EL G I DD +YNT + H
Sbjct: 13 DHKRVGILYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAF 72
Query: 198 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 377
N +PL++GA D+AFPR+N + + + T Y
Sbjct: 73 QIPALTGFFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGY 132
Query: 378 PPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PP S I H + FS+ L G +SI+G +NF+TT
Sbjct: 133 PPYSI-ITHGNTA--FYTFSVLLLGFASILGGVNFLTT 167
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 62.9 bits (146), Expect = 4e-09
Identities = 43/157 (27%), Positives = 59/157 (37%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHK IG +Y +LG P + +YN + T H
Sbjct: 30 DHKRIGIMYLVSAFVFFLIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGL 89
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N +VPL++GA D+AFPR+N + V G Y
Sbjct: 90 MPLNVGLG-NYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYA 148
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL+ VD I + L G++SI GA+NFI T
Sbjct: 149 PLTQKQFAPTAGVDYWIVGIGLTGVASIAGALNFIVT 185
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 60.9 bits (141), Expect = 2e-08
Identities = 42/157 (26%), Positives = 59/157 (37%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHK IG +Y +L P + +++N + T H
Sbjct: 31 DHKRIGIMYILTAVFYLAVGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVG 90
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N VPL++GA D+AFPR+N+ F + + G Y
Sbjct: 91 MPVLTGFA-NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYV 149
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PLSS + VD I L + GI S+ GAIN T
Sbjct: 150 PLSSKAYSSLQGVDYWIIGLLIMGIGSVSGAINIFAT 186
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 59.3 bits (137), Expect = 5e-08
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Frame = +3
Query: 144 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 323
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 324 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
+ +GA G T YPPLS ++ G + L + + G+SS++G++N++TT
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 59.3 bits (137), Expect = 5e-08
Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Frame = +3
Query: 27 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
KDI LY EL PG+ L G+ Q++N +V HA
Sbjct: 12 KDIAILYFIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLV 71
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 374
N L+PL++GA D++F R+NNI F +VE+GAGTG TV
Sbjct: 72 MPALIGGFGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 59.3 bits (137), Expect = 5e-08
Identities = 43/158 (27%), Positives = 59/158 (37%), Gaps = 1/158 (0%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHK IG +Y +L P + + YN I+T H
Sbjct: 23 DHKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFI 82
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVY 377
N +VPL+LGA D+A PR+N + GA G T Y
Sbjct: 83 IQAGLTGFGNFVVPLMLGARDVALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFY 142
Query: 378 PPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
P S A VD + ++ L G SS++G NF+ T
Sbjct: 143 YPFS---AQSESGVDFYLAAILLLGFSSLLGNANFVAT 177
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 58.0 bits (134), Expect = 1e-07
Identities = 32/88 (36%), Positives = 46/88 (52%)
Frame = +3
Query: 228 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 407
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 408 GRSVDLAIFSLHLAGISSIIGAINFITT 491
VD +S+ ++GI +II +INFITT
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITT 206
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 56.4 bits (130), Expect = 3e-07
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +3
Query: 228 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 404
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 405 RGRSVDLAIFSLHLAGISSIIGAINFITT 491
+ VDL + + +AG SS + INFI T
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILT 172
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 56.0 bits (129), Expect = 4e-07
Identities = 46/160 (28%), Positives = 64/160 (40%), Gaps = 3/160 (1%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNP-GSLIG--DDQIYNTIVTAHAXXXXX 191
DHK IG +Y +L G G + Y+ I TAH
Sbjct: 54 DHKKIGVMYIIVAMIMLLRGFADALMMRTQLAMATGGAHGVFPPEHYDQIFTAHGVIMII 113
Query: 192 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*T 371
N +VPL +GA D+AFP +N++ F V N A TG
Sbjct: 114 FMAMPFMTGLM-NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWV 172
Query: 372 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
YPPL+ VD I++L ++GI + + AINF+ T
Sbjct: 173 AYPPLAELGFSPDVGVDYYIWALQISGIGTTLTAINFLVT 212
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 56.0 bits (129), Expect = 4e-07
Identities = 38/157 (24%), Positives = 59/157 (37%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHK I LY +L P + Q YN ++T H
Sbjct: 23 DHKKIAILYLVAGGFFFLVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAA 82
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N +VPL +GA D++FP +N + F + G T Y
Sbjct: 83 MPLLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYA 141
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
LS + +G +D + L ++G+ ++I INF+ T
Sbjct: 142 SLS--LHSKGHGIDFFVLGLQISGLGTLIAGINFLAT 176
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 54.4 bits (125), Expect = 1e-06
Identities = 45/162 (27%), Positives = 64/162 (39%), Gaps = 5/162 (3%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAEL-----GNPGSLIGDDQIYNTIVTAHAXXX 185
DHK IG +Y +L G+ G L + Y+ I TAH
Sbjct: 53 DHKKIGVMYIIVAMVMLLRGFADAIMMRTQLAAATGGSEGYL--PPEHYDQIFTAHGVIM 110
Query: 186 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 365
N VPL +GA D+AFP +N++ F V A TG
Sbjct: 111 IIFMAMPFFTGLM-NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTG 169
Query: 366 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
YPPL+ G VD I++L L+G+ + + +NF+ T
Sbjct: 170 WVAYPPLAGIQYSPGVGVDYYIWALQLSGLGTTLTGVNFLVT 211
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 53.6 bits (123), Expect = 2e-06
Identities = 45/157 (28%), Positives = 63/157 (40%), Gaps = 1/157 (0%)
Frame = +3
Query: 24 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXX 200
H D+G LY AEL PG+ I D +N + T H
Sbjct: 20 HTDVGLLYLISSLGFLFLGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFI 79
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N VP+++ D+A+P++N I F + T P
Sbjct: 80 LPFASAVG-NYFVPIMVRYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----P 133
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
P S I+ G + D+ IF L + GISSI+G+INFI T
Sbjct: 134 PYSV-ISAPGPAADMWIFGLKILGISSILGSINFIVT 169
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 50.0 bits (114), Expect = 3e-05
Identities = 39/157 (24%), Positives = 55/157 (35%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHK IG LY +L P + YN ++T HA
Sbjct: 31 DHKKIGLLYIIVSILGFCLGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFL 90
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N +PL LG D+A PR+N G T Y
Sbjct: 91 IPLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYY 150
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL+ + G SV + ++ L G+ S++G+ NF T
Sbjct: 151 PLTMDGNQTGVSVFMV--AVILNGLGSLLGSANFAAT 185
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 50.0 bits (114), Expect = 3e-05
Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 2/159 (1%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
+HKDIG LY EL + G+ + YN V+ H
Sbjct: 21 NHKDIGVLYLITALFFLVFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFI 80
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N LVPL +GA D+AFPR+N + + G T+Y
Sbjct: 81 SPFAFGFA-NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYA 139
Query: 381 PLS--SNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL+ + I G + +L + + +G++NF+TT
Sbjct: 140 PLNTPAYIPGEGLGATSVVLALIMFTAAVTLGSVNFLTT 178
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 48.4 bits (110), Expect = 9e-05
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Frame = +3
Query: 144 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 323
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 324 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
G G T YP L+ G + + + G SS++G+IN++TT
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTT 208
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 47.6 bits (108), Expect = 2e-04
Identities = 39/161 (24%), Positives = 57/161 (35%), Gaps = 4/161 (2%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHK IG +Y +L PG + + +N + T HA
Sbjct: 28 DHKRIGIMYGVTGFFFFLVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMIFLGV 87
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG----TG* 368
N +PL++GA D+AFPR+N + ++ G G
Sbjct: 88 MPLLSAFM-NYFLPLMIGARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGW 146
Query: 369 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
Y L+S G D L L GI +++ NFI T
Sbjct: 147 FGYANLTSVQFTSGLGPDFWTLGLLLLGIGTLVSGFNFIVT 187
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 47.2 bits (107), Expect = 2e-04
Identities = 29/88 (32%), Positives = 42/88 (47%)
Frame = +3
Query: 228 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 407
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 408 GRSVDLAIFSLHLAGISSIIGAINFITT 491
G VD I+SL LA + S + IN T
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVT 231
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 47.2 bits (107), Expect = 2e-04
Identities = 35/157 (22%), Positives = 56/157 (35%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
+H D+G ++ A+L P S + YN + T H
Sbjct: 28 NHTDLGRMFLTVAVFFFVVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFA 87
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
L+P +LG+ D+AFPR+ F + +G +YP
Sbjct: 88 IPVFEGFAVY-LLPKLLGSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYP 146
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PLSS + G + D + + IS+I A+ T
Sbjct: 147 PLSSTLGAPGINSDFWLIGITFVEISAIAAAVEITVT 183
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 46.4 bits (105), Expect = 3e-04
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
Frame = +3
Query: 108 ELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 284
+LG PG+ D Y +T H N L+PL++GA D+ FP +N
Sbjct: 66 QLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYVN 125
Query: 285 NIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGRSVDLAIFSLHLAGI 455
+ + V G G G T+YPP + S + + L + SL L I
Sbjct: 126 MLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLSSLILFII 185
Query: 456 SSIIGAINFITT 491
+G +N++ T
Sbjct: 186 GFTMGGLNYVVT 197
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 45.6 bits (103), Expect = 6e-04
Identities = 32/157 (20%), Positives = 58/157 (36%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
+H D+G ++ A+L +P S + Y + T H
Sbjct: 28 NHTDLGRMFLGASVVFFLIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFA 87
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
L+P +LG+ D+A+PR++ F + +G +YP
Sbjct: 88 IPMFEGLTIY-LLPKMLGSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYP 146
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL+S + G + D + + IS+I A+ + T
Sbjct: 147 PLASTLGSPGINSDFWLLGITFVEISAIAAAVEIVVT 183
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 45.6 bits (103), Expect = 6e-04
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Frame = +3
Query: 138 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 317
+ + Y +VT H N L+PL +GA D+A +N + +
Sbjct: 98 EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSS 157
Query: 318 XXXXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSIIGAINFI 485
+E G +G +YPPLS+ ++ G + + + S+ L IS ++G IN+I
Sbjct: 158 VIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYI 217
Query: 486 TT 491
TT
Sbjct: 218 TT 219
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 45.6 bits (103), Expect = 6e-04
Identities = 28/73 (38%), Positives = 32/73 (43%)
Frame = +2
Query: 272 PTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYFFTTFSR 451
P NK +KIL TPL Y N C K C + +NSLP Y T R +F T
Sbjct: 79 PPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCS 138
Query: 452 YFINYRSN*FYYN 490
N N YYN
Sbjct: 139 SVFNSSLNQLYYN 151
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 44.4 bits (100), Expect = 0.001
Identities = 39/158 (24%), Positives = 55/158 (34%), Gaps = 1/158 (0%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXX 197
DHK IG Y +L P + IG D+ YN I T H
Sbjct: 28 DHKIIGRRYTVTAFVFLALGGVLALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMFLF 86
Query: 198 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 377
LVPL++G IAFPR+N + V+ G G Y
Sbjct: 87 AVPVMQAMAIY-LVPLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAY 145
Query: 378 PPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PLS G+ D+ + +S++ A+ + T
Sbjct: 146 VPLSGPQYAAGKRADIWAQMITFTEVSALAIAVEIVVT 183
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 44.4 bits (100), Expect = 0.001
Identities = 38/157 (24%), Positives = 57/157 (36%)
Frame = +3
Query: 21 DHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 200
DHK IG Y +L P + + Y+++ T H
Sbjct: 48 DHKRIGLRYIVTAFVFLLLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFLYA 107
Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
N L PL+LG+ D+AFPR+ + + G Y
Sbjct: 108 LPVLSGFA-NYLWPLMLGSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYV 166
Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
PL+S G ++D+ + L GIS+ GA NF+ T
Sbjct: 167 PLTSLDYSAGANIDIYGLGMILLGISTTGGAANFVVT 203
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 43.6 bits (98), Expect = 0.002
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = +3
Query: 234 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 413
L+PL++GA D+ FPR+ + + + G +Y PLS++ G
Sbjct: 124 LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGL 183
Query: 414 SVDLAIFSLHLAGISSIIGAINFI 485
S D + + LA I+S+ A+ I
Sbjct: 184 SADFWLIGITLAEIASVTAAVEII 207
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 42.3 bits (95), Expect = 0.006
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Frame = +3
Query: 114 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 293
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 294 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 458
F + +G +G T Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 459 SIIGAINFITT 491
S++G++NFI T
Sbjct: 194 SLLGSLNFIAT 204
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 40.7 bits (91), Expect = 0.017
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +3
Query: 228 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 404
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 405 RGRSVDLAIFSLHLAGISSIIGAINFITT 491
G +L +L L+G+SS + +NF+ T
Sbjct: 139 YGLGTNLIQIALILSGLSSTLTGVNFVMT 167
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 40.3 bits (90), Expect = 0.023
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +3
Query: 234 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 410
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 411 RSVDLAIFSLHLAGISSIIGAINFITT 491
D A ++ L GI +II + + T
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILAT 197
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 39.1 bits (87), Expect = 0.053
Identities = 22/86 (25%), Positives = 36/86 (41%)
Frame = +3
Query: 234 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 413
++PL+LG D+ FPR+N + ++ G YPPL+ G
Sbjct: 105 IIPLMLGTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGL 164
Query: 414 SVDLAIFSLHLAGISSIIGAINFITT 491
+D + IS+++ AI I T
Sbjct: 165 GLDFYTTVVTFMEISALVAAIELIAT 190
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 37.9 bits (84), Expect = 0.12
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 108 ELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 281
EL +P S GD Y +VTAH N L+P +G+ D+A+PR+
Sbjct: 88 ELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRL 147
Query: 282 NNIRF 296
N+I F
Sbjct: 148 NSIGF 152
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 37.1 bits (82), Expect = 0.21
Identities = 24/84 (28%), Positives = 36/84 (42%)
Frame = +3
Query: 234 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 413
L+P +LGA D+ FPR++ F V G + PPL++ G
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226
Query: 414 SVDLAIFSLHLAGISSIIGAINFI 485
+ D + + IS+I GAI I
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEII 250
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 36.7 bits (81), Expect = 0.28
Identities = 30/119 (25%), Positives = 43/119 (36%)
Frame = +3
Query: 129 LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 308
L+G D YN I T H L+P +L A D+ FPR++
Sbjct: 75 LVGQD-FYNQIFTVHGTTMMFLFAVPVVEALGVM-LLPQMLAARDLPFPRLSAFAIWAYI 132
Query: 309 XXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFI 485
+ G +YPPL+ G + D + + IS+I GAI I
Sbjct: 133 VGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGDNADFWLLGIGFIEISAIAGAIEII 191
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 36.7 bits (81), Expect = 0.28
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = +3
Query: 234 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 413
L+P +LGA D+ FPR++ + + + +G +YPPL++ G
Sbjct: 126 LLPALLGARDLPFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGL 183
Query: 414 SVDLAIFSLHLAGISSIIGAINFI 485
D+ + L ++SI A+ I
Sbjct: 184 GSDIWLLGLSFIEVASIAAAVELI 207
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 35.5 bits (78), Expect = 0.65
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = +3
Query: 228 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 407
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 408 GRSVDLAIFSLHLAGISSIIGAINFITT 491
G VD ++++ + + + + AIN I T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIAT 230
>UniRef50_Q6EGM1 Cluster: Cytochrome c oxidase subunit I; n=1;
Brotia episcopalis|Rep: Cytochrome c oxidase subunit I -
Brotia episcopalis
Length = 215
Score = 35.1 bits (77), Expect = 0.86
Identities = 34/124 (27%), Positives = 46/124 (37%)
Frame = +3
Query: 120 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 299
PG+ ++ ++ I TA A + L PL A +AF NN+ F
Sbjct: 24 PGAACVVNRPFSVIATAPAFVMTFCWATPTTTGGFGSWLAPLTFVAAVMAFRPPNNMNFW 83
Query: 300 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSIIGAIN 479
NGA T + L+ N+A +LAIF AG I A N
Sbjct: 84 RLPAAAWPWRFWAAAVNGAVIVWTAFRALAKNLAPVVVFANLAIFFRRWAGALFIFVAAN 143
Query: 480 FITT 491
FI T
Sbjct: 144 FIMT 147
>UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;
n=21; Neocoleoidea|Rep: NADH-ubiquinone oxidoreductase
chain 2 - Sepia officinalis (Common cuttlefish)
Length = 375
Score = 32.7 bits (71), Expect = 4.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 32 YWNIIFYFWYLIRNNWNIFKTFNS 103
YWNI+F+FWYLI ++ K NS
Sbjct: 348 YWNIMFHFWYLISFISHLAKINNS 371
>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
Sub-unit I of an aa3-type cytochrome oxidase -
Thiobacillus ferrooxidans (Acidithiobacillus
ferrooxidans)
Length = 627
Score = 32.3 bits (70), Expect = 6.0
Identities = 22/86 (25%), Positives = 37/86 (43%)
Frame = +3
Query: 234 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 413
L+PL+LG ++ FP++ + + G TG YPPL+ N G
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSP-TTGGFQTGWWGYPPLAQN---SGS 235
Query: 414 SVDLAIFSLHLAGISSIIGAINFITT 491
+ + ++S++GAIN T
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGT 261
>UniRef50_Q8ID15 Cluster: Putative uncharacterized protein
MAL13P1.352; n=2; Plasmodium|Rep: Putative
uncharacterized protein MAL13P1.352 - Plasmodium
falciparum (isolate 3D7)
Length = 1106
Score = 32.3 bits (70), Expect = 6.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 305 TPLPYIINFKKNCRKWCRN 361
T L Y + KK+CRKWCRN
Sbjct: 697 TKLMYCVIKKKHCRKWCRN 715
>UniRef50_Q0BZ17 Cluster: Amidohydrolase family/endoribonuclease
L-PSP; n=1; Hyphomonas neptunium ATCC 15444|Rep:
Amidohydrolase family/endoribonuclease L-PSP -
Hyphomonas neptunium (strain ATCC 15444)
Length = 755
Score = 31.9 bits (69), Expect = 8.0
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -3
Query: 370 VHPVPAPFSTILLEINNIREGGRSQNLILFIRGNAISG-APSIRG 239
+H AP+S + + + ++R+G S ++ + GN I+G AP + G
Sbjct: 164 LHRYGAPYSILNVRVLDVRDGSLSAPSVVTVSGNVITGVAPYVEG 208
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 395,552,979
Number of Sequences: 1657284
Number of extensions: 6783276
Number of successful extensions: 13931
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 13526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13840
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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