Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0954
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   109   2e-25
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    27   2.0  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   4.7  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   6.2  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   8.2  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  109 bits (263), Expect = 2e-25
 Identities = 61/157 (38%), Positives = 77/157 (49%), Gaps = 2/157 (1%)
 Frame = +3

Query: 27  KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 200
           KDI  LY                    EL  PGS  L G+ Q+YN  ++AH         
Sbjct: 18  KDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFI 77

Query: 201 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 380
                    N LVPL++GAPD+A+PR+NN  F              + E G G G TVYP
Sbjct: 78  IPALFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYP 137

Query: 381 PLSSNIAHRGRSVDLAIFSLHLAGISSIIGAINFITT 491
           PLSS  +H G ++DLAI SL L GISS +G++N I T
Sbjct: 138 PLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIAT 174


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 384 LSSNIAHRGRSVDLAIFSLHLAGISSIIGAINF 482
           ++ NI + GRS  + +  L +AGIS I  A+++
Sbjct: 109 VAPNIYYMGRSSVINVGGLRIAGISGIYSAMDY 141


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 299 TPTPLPYIINFKKNCRKWCRNRMNS 373
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = -3

Query: 478 LIAPIIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINN 320
           LI+P    IP   ++K+A + D+P C+ + ES   ++   P P +T + ++++
Sbjct: 30  LISPPPSPIP---NDKVASTVDVPKCSTIPESPKDSI-VEPKPTATPVAQLHS 78


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 120 DFLIQLELKVLKMFQL 73
           DFLIQL+ KV   FQL
Sbjct: 609 DFLIQLKSKVFNRFQL 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,566
Number of Sequences: 5004
Number of extensions: 28703
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)