Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0953
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    28   0.84 
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    27   1.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   1.5  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   4.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   5.9  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   5.9  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   5.9  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   7.9  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.9  

>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 248 WSNNRSFILGFITLSD*SKALTWFKSH 168
           W++N ++ILGFIT  +   +L  F+ H
Sbjct: 251 WASNFAWILGFITNKEIENSLESFRKH 277


>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 63  LGDNEVLQGLDLALTLMYRGEECILQLAPRFAYGEMGLKPG 185
           +G  ++++G D  +  M  GE+  L + P + YG  G  PG
Sbjct: 51  IGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGF-PG 90


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
 Frame = +3

Query: 9    GTRDSNNIVEKRDQIKIYL-------GDNEVLQGLDLALTLMYRGEE 128
            GTR+S N +E+R QI  YL       GD +V+  L L +  M+  ++
Sbjct: 1051 GTRESLNKLERRTQILSYLLFQIEQSGDEKVINQLSLYIFEMFMDDD 1097


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 393 LAVQLYRRALDILDESEGGITDPTPSGE 476
           L V+  R  LD+LD+S+  +T P+ + E
Sbjct: 208 LHVESARAGLDLLDQSDFSLTSPSSAKE 235


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -3

Query: 230 FILGFITLSD*SKALTWFKSHFSIGKSWSKLQN 132
           ++  ++TL   ++ +T+ K+HF  G +WS  Q+
Sbjct: 246 WVRSYLTLL--TELITYVKTHFKTGLTWSTKQD 276


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 273  VLHDWSEEPEHDVLSIAEKMEIGIRRRARGNWWYGR 380
            +LH WS+E     + IA   EI  RR      WYG+
Sbjct: 1401 LLHHWSQEDYGTAVYIAPIQEIVDRRYEE---WYGK 1433


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 197 SKALTWFKSHFSIGKSWSKLQ 135
           S A  WF+ H  + KSW+K +
Sbjct: 100 SWATFWFEVHIRLPKSWAKYE 120


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 351 RARGNWWYGRDEPQLAVQLYRRAL 422
           +A GN +   D PQ A++ Y+RAL
Sbjct: 444 QALGNCYEKIDRPQEAIKSYKRAL 467


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -1

Query: 268 LASSHVSGPIIGPLYLGSSHCPTNPRLSPGLSPIS 164
           L  +H     + P   GS H P  P LSP  S  S
Sbjct: 496 LFKNHSKSNTLSPRRKGSRHGPREPCLSPDASSSS 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,873
Number of Sequences: 5004
Number of extensions: 44598
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)