Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0953
(478 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 33 0.12
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0) 30 1.1
SB_14245| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15) 28 4.5
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 27 6.0
SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8) 27 6.0
SB_42639| Best HMM Match : Homeobox (HMM E-Value=1e-26) 27 7.9
SB_531| Best HMM Match : wnt (HMM E-Value=0) 27 7.9
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 27 7.9
SB_46305| Best HMM Match : SSDP (HMM E-Value=2) 27 7.9
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 33.1 bits (72), Expect = 0.12
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +3
Query: 246 PDTWLEAKLVLHDWSEEPEHDVLSIAEKMEIGIRRRARGNWWY 374
P+ + +VL D+ E + + L++ + ++ + R+ G WWY
Sbjct: 256 PEAQSDIYVVLDDFDEADQENELNLVKHEKVRVIRKTEGGWWY 298
>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1020
Score = 30.7 bits (66), Expect = 0.64
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 165 LHRQILEQVAKYIPHLCTLKLMLGPNLAI 79
LH+Q++ A + +LC L +M GP L I
Sbjct: 802 LHQQVIRSFAMILSNLCLLVIMFGPKLYI 830
>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
Length = 266
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 63 LGDNEVLQGLDLALTLMYRGEECILQLAPRFAYGEMG 173
LG V+QG + L M GE+ L + P AYGE G
Sbjct: 76 LGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAYGENG 112
>SB_14245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -2
Query: 132 YIPHLCTLKLMLGPNLAIPHCLLNIFLSDLFSPQCCYCPS 13
Y P C L +L P L P L F+P CYCPS
Sbjct: 19 YCPSWCVLHPVLLPILMCPSPRATAHLDVSFTP--CYCPS 56
>SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)
Length = 206
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 294 EPEHDVLSIAEKMEIGIRRRARGNWWYGRDEPQLAVQLYRRALD 425
EPE+ +K+++ ++A GN YG A+ LY +A++
Sbjct: 19 EPENSPEEEQDKVKLAEAKKAEGNREYGLKNYVSAIALYSKAIE 62
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 321 AEKMEIGIRRRARGNWWYGRD 383
AE++E G+ G W YGRD
Sbjct: 572 AERVEEGVTPNEHGTWLYGRD 592
>SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8)
Length = 405
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 144 APRFAYGEMGLKPGESLGLVGQCDEPK 224
AP+ A GE KP ES G Q +EPK
Sbjct: 69 APQGACGEDTEKPSESTGEAEQSEEPK 95
>SB_42639| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 225
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 165 EMGLKPGESLGLVGQCDEPKYKGPIIGPDTWL 260
E L+ E GL GQC P Y G + P +L
Sbjct: 163 EATLRSEELGGLYGQCAMPSYYGDYVLPSAYL 194
>SB_531| Best HMM Match : wnt (HMM E-Value=0)
Length = 646
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -1
Query: 241 IIGPLYLGSSHCPTNPRLSPGLS-PI-SP*ANLGASCKIHSSPLYIKVNAR 95
+ GPL C T+ LSPGLS P+ P ++ + ++ S ++ VN R
Sbjct: 28 VTGPLNSHVHTCLTSRALSPGLSHPVLIPREDISSETRLKSRLEFLNVNTR 78
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 165 EMGLKPGESLGLVGQCDEPKYKGPIIGPDTWL 260
E L+ E GL GQC P Y G + P +L
Sbjct: 1002 EATLRSEELGGLYGQCAMPSYYGDYVLPSAYL 1033
>SB_46305| Best HMM Match : SSDP (HMM E-Value=2)
Length = 848
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 472 PDGVGSVIPPSLSSRMSRALRYSCTASCGSSR 377
PD + V P LSS+ + T+SC SSR
Sbjct: 365 PDNINKVCIPLLSSKAETESSCNSTSSCTSSR 396
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,046,213
Number of Sequences: 59808
Number of extensions: 326407
Number of successful extensions: 898
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -