Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0953
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016430-1|AAB65370.1|  261|Caenorhabditis elegans Fk506-binding...    37   0.009
U80445-9|AAB37799.1|  264|Caenorhabditis elegans Fk506-binding p...    36   0.015
U80445-8|AAK68259.1|  300|Caenorhabditis elegans Fk506-binding p...    36   0.015
Z92832-2|CAB07371.1|  431|Caenorhabditis elegans Hypothetical pr...    35   0.026
AL034393-19|CAA22328.1|  290|Caenorhabditis elegans Hypothetical...    32   0.24 
Z75554-8|CAA99959.2|  259|Caenorhabditis elegans Hypothetical pr...    30   0.99 
U27353-1|AAA68610.1|  108|Caenorhabditis elegans rotamase protein.     30   0.99 
AL034393-20|CAA22330.1|  108|Caenorhabditis elegans Hypothetical...    30   0.99 
Z54342-17|CAA91155.2|  365|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z49913-8|CAA90148.2|  365|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z83235-10|CAB05776.2|  515|Caenorhabditis elegans Hypothetical p...    27   5.3  
AL032645-2|CAA21675.2|  515|Caenorhabditis elegans Hypothetical ...    27   5.3  
AF273814-1|AAG15163.1|  489|Caenorhabditis elegans nuclear recep...    27   5.3  
AF273813-1|AAG15162.1|  454|Caenorhabditis elegans nuclear recep...    27   5.3  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U13019-13|AAC24450.1|  336|Caenorhabditis elegans Serpentine rec...    27   9.2  
AL032646-9|CAA21684.1|  305|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF016430-1|AAB65370.1|  261|Caenorhabditis elegans Fk506-binding
           protein family protein3 protein.
          Length = 261

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +3

Query: 63  LGDNEVLQGLDLALTLMYRGEECILQLAPRFAYGEMGLKP 182
           +G  +V++G+D+A+  M +GE+  + + P  AYGE G  P
Sbjct: 197 MGSGQVIKGMDIAMEGMCQGEKRKVVIPPELAYGENGRPP 236


>U80445-9|AAB37799.1|  264|Caenorhabditis elegans Fk506-binding
           protein family protein5, isoform a protein.
          Length = 264

 Score = 35.9 bits (79), Expect = 0.015
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 63  LGDNEVLQGLDLALTLMYRGEECILQLAPRFAYGEMGLKP 182
           L +NEV++G+D+A+T M  GE   + +   F YG+ G  P
Sbjct: 202 LNNNEVIKGMDIAMTGMCEGERRQVVIPSDFGYGDDGRAP 241


>U80445-8|AAK68259.1|  300|Caenorhabditis elegans Fk506-binding
           protein family protein5, isoform b protein.
          Length = 300

 Score = 35.9 bits (79), Expect = 0.015
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 63  LGDNEVLQGLDLALTLMYRGEECILQLAPRFAYGEMGLKP 182
           L +NEV++G+D+A+T M  GE   + +   F YG+ G  P
Sbjct: 238 LNNNEVIKGMDIAMTGMCEGERRQVVIPSDFGYGDDGRAP 277


>Z92832-2|CAB07371.1|  431|Caenorhabditis elegans Hypothetical
           protein F31D4.3 protein.
          Length = 431

 Score = 35.1 bits (77), Expect = 0.026
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 3   EFGTR-DSNNIVEKRDQIKIYLGDNEVLQGLDLALTLMYRGEECILQLAPRFAYGEMGLK 179
           E GT+ DS+   ++ DQ    LG   V++G DL +  M +GE     +   + YG+ G  
Sbjct: 45  ENGTKFDSSR--DRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSP 102

Query: 180 P 182
           P
Sbjct: 103 P 103



 Score = 31.1 bits (67), Expect = 0.43
 Identities = 20/82 (24%), Positives = 39/82 (47%)
 Frame = +3

Query: 231 GPIIGPDTWLEAKLVLHDWSEEPEHDVLSIAEKMEIGIRRRARGNWWYGRDEPQLAVQLY 410
           G  I  +  LE  + L ++ + P    ++  EK++   + + RG  +  +   +LA   Y
Sbjct: 218 GSNIPVNATLEFTIFLKEFEKVPATWEMTAEEKLDAAKQAKDRGTMYLQKGNLKLAYNKY 277

Query: 411 RRALDILDESEGGITDPTPSGE 476
           +RA ++L+  +   TDP    E
Sbjct: 278 KRAEEVLEYEKS--TDPEKMAE 297


>AL034393-19|CAA22328.1|  290|Caenorhabditis elegans Hypothetical
           protein Y18D10A.25 protein.
          Length = 290

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 36  EKRDQIKIYLGDNEVLQGLDLALTLMYRGEECILQLAPRFAYGEMGLK 179
           E ++ I   +G  EV+ GLD+ +  M  GE     ++ ++ YG  G +
Sbjct: 124 ESQNPIIFKIGFGEVIPGLDIGIPKMKVGEIATFHVSGKYGYGRAGFR 171


>Z75554-8|CAA99959.2|  259|Caenorhabditis elegans Hypothetical
           protein ZC455.10 protein.
          Length = 259

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 63  LGDNEVLQGLDLALTLMYRGEECILQLAPRFAYGEMGLKP 182
           L + EV+ G+D+A+  M  GE   + +   + YG  G  P
Sbjct: 197 LRNREVIDGMDIAMDGMCEGERRRVVIPSEYGYGSQGSPP 236


>U27353-1|AAA68610.1|  108|Caenorhabditis elegans rotamase protein.
          Length = 108

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 54  KIYLGDNEVLQGLDLALTLMYRGEECILQLAPRFAYGEMGLKP 182
           K  +G  EV++G D  +  M  GE+  L ++    YG  G+ P
Sbjct: 48  KFKIGKGEVIKGWDQGVAQMSVGEKSKLTISADLGYGPRGVPP 90


>AL034393-20|CAA22330.1|  108|Caenorhabditis elegans Hypothetical
           protein Y18D10A.19 protein.
          Length = 108

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 54  KIYLGDNEVLQGLDLALTLMYRGEECILQLAPRFAYGEMGLKP 182
           K  +G  EV++G D  +  M  GE+  L ++    YG  G+ P
Sbjct: 48  KFKIGKGEVIKGWDQGVAQMSVGEKSKLTISADLGYGPRGVPP 90


>Z54342-17|CAA91155.2|  365|Caenorhabditis elegans Hypothetical
           protein C08H9.8 protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 27  NIVEKRDQIKIYLGDNEVLQGLDLALTLMYRGEEC 131
           NI+ KR++I I + D EVL G D+ L   +   EC
Sbjct: 225 NILVKRNKI-IRISDFEVLSGYDVPLPFFWLAPEC 258


>Z49913-8|CAA90148.2|  365|Caenorhabditis elegans Hypothetical
           protein C08H9.8 protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 27  NIVEKRDQIKIYLGDNEVLQGLDLALTLMYRGEEC 131
           NI+ KR++I I + D EVL G D+ L   +   EC
Sbjct: 225 NILVKRNKI-IRISDFEVLSGYDVPLPFFWLAPEC 258


>Z83235-10|CAB05776.2|  515|Caenorhabditis elegans Hypothetical
           protein Y67A6A.2 protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 249 DTWLEAKLVLHDWSEE-PEHDVLSIAEKMEIGIRRRARGNWW 371
           D W    ++  DW    PE++ +SI +++ +   R    +WW
Sbjct: 297 DEWKRNFVLFSDWLRALPEYNQMSIEDQIVLAKNRYGTFHWW 338


>AL032645-2|CAA21675.2|  515|Caenorhabditis elegans Hypothetical
           protein Y67A6A.2 protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 249 DTWLEAKLVLHDWSEE-PEHDVLSIAEKMEIGIRRRARGNWW 371
           D W    ++  DW    PE++ +SI +++ +   R    +WW
Sbjct: 297 DEWKRNFVLFSDWLRALPEYNQMSIEDQIVLAKNRYGTFHWW 338


>AF273814-1|AAG15163.1|  489|Caenorhabditis elegans nuclear receptor
           NHR-62 protein.
          Length = 489

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 249 DTWLEAKLVLHDWSEE-PEHDVLSIAEKMEIGIRRRARGNWW 371
           D W    ++  DW    PE++ +SI +++ +   R    +WW
Sbjct: 271 DEWKRNFVLFSDWLRALPEYNQMSIEDQIVLAKNRYGTFHWW 312


>AF273813-1|AAG15162.1|  454|Caenorhabditis elegans nuclear receptor
           NHR-62 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 249 DTWLEAKLVLHDWSEE-PEHDVLSIAEKMEIGIRRRARGNWW 371
           D W    ++  DW    PE++ +SI +++ +   R    +WW
Sbjct: 236 DEWKRNFVLFSDWLRALPEYNQMSIEDQIVLAKNRYGTFHWW 277


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 153 ILEQVAKYIP-HLCTLKLMLGPNLAIPHCL 67
           I  Q AK+   H+C  KL  GP L+I HC+
Sbjct: 27  IQHQKAKHFKCHICHKKLFSGPGLSI-HCM 55


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 153 ILEQVAKYIP-HLCTLKLMLGPNLAIPHCL 67
           I  Q AK+   H+C  KL  GP L+I HC+
Sbjct: 27  IQHQKAKHFKCHICHKKLFSGPGLSI-HCM 55


>U13019-13|AAC24450.1|  336|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 9 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 251 VWSNNRSFILGFITLS 204
           VWS N SFI+ F++LS
Sbjct: 147 VWSKNLSFIVAFVSLS 162


>AL032646-9|CAA21684.1|  305|Caenorhabditis elegans Hypothetical
           protein Y54E2A.10 protein.
          Length = 305

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 174 LKPGESLGLVGQCDEPKYKGPIIGPDTWLEAKLVLHDWSEEPEHDVLSI 320
           L P  S   + +CD P Y    I   T L A+L+   W E  + DV+ +
Sbjct: 102 LLPFVSWNSIRECD-PTYTSSSISTSTILYAQLLSLRWQEHCDADVIFV 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,807,610
Number of Sequences: 27780
Number of extensions: 250425
Number of successful extensions: 668
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)