Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0953
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.42 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.1  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 154 NLGASCKIHSSP 119
           NLG++C+IH SP
Sbjct: 437 NLGSACRIHGSP 448


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 214 SHCPTNPRLSPGLSPISP*ANLGASCKIHSSPL 116
           S   +   LSP  S ++  A  G SC IH  PL
Sbjct: 411 SRAASKEDLSP--SSLADGARFGGSCLIHGPPL 441


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 214 SHCPTNPRLSPGLSPISP*ANLGASCKIHSSPL 116
           S   +   LSP  S ++  A  G SC IH  PL
Sbjct: 411 SRAASKEDLSP--SSLADGARFGGSCLIHGPPL 441


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -2

Query: 282 HAALIWLQAMCLVQ**VLYTWVHHTVRLIQGSHLV*VPFLHRQILEQVAK-YIP 124
           + +L+WL A C+    +L     HT      SH V       QI   +   YIP
Sbjct: 161 YVSLVWLGAACISLPPLLIMGNEHTYSETGPSHCVVCQNFFYQIYATLGSFYIP 214


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 315 SIAEKMEIGIRRRARGNWWYGRDEPQLAVQLYRRALDILDESEGGI 452
           S+A   +    RRA  N   GR+  + + +  +R    LD   GG+
Sbjct: 460 SLASLTDAENSRRAMENLGDGRNNKEDSEEFRQRLRKELDSKTGGV 505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,932
Number of Sequences: 438
Number of extensions: 3379
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)