Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0951
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    25   2.7  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    25   4.7  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   4.7  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    24   8.2  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    24   8.2  

>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 133 RFLYIASITRVSYIMSIVITLLLKS 59
           RF  IAS  RVSY+M  ++ L + S
Sbjct: 315 RFFKIASSFRVSYLMGCLLDLFVPS 339


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 292 AKSQSVYCCDEISTFTS 342
           A  QS  CC+E+STF S
Sbjct: 272 AYEQSKACCNELSTFLS 288


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 243 NQCIHCQAEEGTIHHIIFDCQSF 175
           +QC+H QA E   H++  D + F
Sbjct: 184 SQCVHYQANERGKHYVSMDPEIF 206


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -3

Query: 214 RDDPS---HYFRLPKFHNSKTCVGIIKFLPRFLYIASITRVSYIMSIV 80
           R+DPS   +Y  +    +  T  G++ F P +LY+ SI      M I+
Sbjct: 510 RNDPSVVRNYGNILVEFSKITPDGLVAFFPSYLYLESIVSSWQSMGIL 557


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 104 SILYYEHCNHTSIKICNRSSNFNIYGWSKNQL 9
           S++  +  NHTSI+   R S  NI  +  N +
Sbjct: 273 SLIISDELNHTSIRFGARLSGANIRVYKHNDM 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,637
Number of Sequences: 5004
Number of extensions: 28198
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)