Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0951
(360 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06) 29 1.5
SB_51866| Best HMM Match : Pkinase (HMM E-Value=0) 28 2.0
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08) 28 2.6
SB_30031| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_44255| Best HMM Match : RVT_1 (HMM E-Value=7.6e-29) 27 3.5
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_7693| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09) 27 6.1
SB_51555| Best HMM Match : ATP-cone (HMM E-Value=3.3) 26 8.0
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_45336| Best HMM Match : CPL (HMM E-Value=8.6) 26 8.0
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
>SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)
Length = 1826
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 233 IHWLFETMPSLARCDGAVLWPNLNLFIVVMKSRLSLVFN 349
I +LF + + RC VL+P++ + +V+ +LS V N
Sbjct: 1627 IRYLFAVISPINRCPCGVLYPSIGIPVVLNPHKLSQVGN 1665
>SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 948
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 342 TSESRDFITTINRLRFGHNTAPSHLARL 259
TSE + F+ + FG+N PSHL L
Sbjct: 786 TSEQQQFLQYLTSQSFGNNQIPSHLLSL 813
>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
Length = 688
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Frame = -3
Query: 205 PSHYFRLPKFHNSKT-----CVGIIKFLPRFLYIA 116
PS FR P FH + CVGI F+ RF+ +A
Sbjct: 320 PSLIFRRPNFHRMEVWMVFWCVGITDFVIRFITMA 354
>SB_30031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 27.9 bits (59), Expect = 2.6
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -1
Query: 351 KLKTSESRDFITTINRLRFGHNTAPSHLARLGIVSNNQCIHCQAEEGTIHHIIFDC 184
KL SR FI + N+ P L L + + I+CQ E I H+I +C
Sbjct: 50 KLDPRSSRHFIVKVQTQHL--NSHPRQL--LTVYDKSLSINCQIECPEIFHVIMEC 101
>SB_44255| Best HMM Match : RVT_1 (HMM E-Value=7.6e-29)
Length = 1017
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 309 NRLRFGHNTAPSHLARL--GIVSNNQCIHCQAEEGTIH 202
NRL FG N+AP R GI+ + CQ ++ IH
Sbjct: 424 NRLPFGINSAPEFFQRAMSGILEGLDGVVCQMDDILIH 461
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 27.1 bits (57), Expect = 4.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -1
Query: 351 KLKTSESRDFITTINRLRFGHNTAPSHLARLGIVSNNQCIHCQAEEGTIHHIIFDC 184
KL SR FI + N+ P L L + + I CQ E I H+I +C
Sbjct: 1461 KLDPRSSRPFIVKVQTQNL--NSHPRQL--LTVYDKSLSIDCQIECPEIFHVIMEC 1512
>SB_7693| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)
Length = 688
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 122 HCLNNKSILYYEHCNHTSIKICNRSSNFNIY 30
HC NKSI+ HC H I + N N +Y
Sbjct: 231 HCNKNKSIIIILHCAHFLI-LSNSFLNVVVY 260
>SB_51555| Best HMM Match : ATP-cone (HMM E-Value=3.3)
Length = 491
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 149 YQISPSFFIHCLNNKSILYYEHCNHTSIKICNRSSNFNIYGWSKNQLAS 3
+ +P F +C N++ I + H +I +C + ++Y S QL S
Sbjct: 6 WNFAPRFPCYCKNDQCIRHTRHSPEYNIHVCTTAK--DVYDISSPQLIS 52
>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -3
Query: 199 HYFRLPKFHNSKTCVGIIKFLPRFLYIASITRVSYIMSIVITLL 68
H+ LP+ + C+ II + F+ I I + I+ I+I ++
Sbjct: 517 HHHHLPETSSFSPCINIIVVVILFVIIVYIVVIFVIIIIIIIIM 560
>SB_45336| Best HMM Match : CPL (HMM E-Value=8.6)
Length = 460
Score = 26.2 bits (55), Expect = 8.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 203 WIVPSSA*QCIHWLFETMP 259
+++PS QC+HW +E P
Sbjct: 288 FLLPSGQKQCLHWNYEDSP 306
>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 235 YTLSSRRRDDPSHYFRLPKFHNSKTCVGII 146
YTL RD P ++F + H S GI+
Sbjct: 678 YTLCDGYRDPPEYWFMVGNIHGSNQVHGIL 707
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,628,690
Number of Sequences: 59808
Number of extensions: 205944
Number of successful extensions: 464
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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