Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0951
         (360 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47225.1 68418.m05823 hypothetical protein                          31   0.30 
At2g02650.1 68415.m00204 reverse transcriptase-related similar t...    30   0.40 
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ...    30   0.53 
At3g25270.1 68416.m03156 hypothetical protein                          29   0.93 
At5g01050.1 68418.m00008 laccase family protein / diphenol oxida...    28   2.1  
At3g61500.1 68416.m06888 hypothetical protein                          28   2.1  
At4g04650.1 68417.m00680 hypothetical protein                          27   3.8  
At5g50620.1 68418.m06270 hypothetical protein                          27   5.0  
At5g50510.1 68418.m06256 hypothetical protein                          27   5.0  
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d...    26   8.7  
At3g02920.1 68416.m00287 replication protein-related similar to ...    26   8.7  
At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein ...    26   8.7  
At1g21330.1 68414.m02667 hypothetical protein                          26   8.7  

>At5g47225.1 68418.m05823 hypothetical protein
          Length = 351

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 249 SNNQCIHCQAEEGTIHHIIFDC 184
           ++ +C  C A+E TI+H+IF+C
Sbjct: 69  ADKKCPRCGADEETINHLIFEC 90


>At2g02650.1 68415.m00204 reverse transcriptase-related similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278
          Length = 365

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 237 CIHCQAEEGTIHHIIFDC 184
           C  C  EE TIHHI+F+C
Sbjct: 75  CQRCCIEEETIHHIMFNC 92


>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 772

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 312 INR-LRFGHNTAPSHLARLGIVSNNQCIHCQAE 217
           +NR +RF H   P H   L  VS ++C+ C+ E
Sbjct: 517 VNRQMRFCHPIHPDHYLPLSFVSGSKCLACKLE 549


>At3g25270.1 68416.m03156 hypothetical protein
          Length = 343

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 306 RLRFGHNTAPSHLARLGIVSNNQCIHCQAEEGTIHHIIFDC 184
           +L  G      +L R  I ++ QC  C  E+ T  H+ FDC
Sbjct: 33  KLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDC 73


>At5g01050.1 68418.m00008 laccase family protein / diphenol oxidase
           family protein similar to laccase [Pinus
           taeda][GI:13661201], lac110 laccase, Populus
           trichocarpa, EMBL:PTY13773
          Length = 586

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -3

Query: 187 LPKFHNSKTCVGIIKFLPRFLYIAS---ITRVSYIMSIVITLLLKSAIGPLILISTGGPK 17
           +P+ H+S +    +  L  F  IAS   +  V ++  +V+T L K  + P++  S  GP 
Sbjct: 1   MPRVHHSLSNQAFLVLL-LFSSIASAAIVEHVLHVKDVVVTPLCKEQMIPIVNGSLPGPT 59

Query: 16  IN 11
           IN
Sbjct: 60  IN 61


>At3g61500.1 68416.m06888 hypothetical protein
          Length = 279

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -3

Query: 223 SRRRDDPSHYFRLPKFHNSKTCVGIIKFLPRFLYIASITRVSYIMSIVITLLLKS 59
           S+ R+    Y     FH  K C+   K L +  Y A++   +YI S+ + +L  S
Sbjct: 97  SKCREVLGRYVESLNFHKVKNCIKEAKVLMKAFYGANVL-TAYICSVFVIVLSNS 150


>At4g04650.1 68417.m00680 hypothetical protein 
          Length = 332

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 270 LARLGIVSNNQCIHCQAEEGTIHHIIFDCQ-SFIIQRLV*ALSNFS 136
           L   G+    +C+ C A + +  H+ F+CQ S ++ R   A +N +
Sbjct: 160 LQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLN 205


>At5g50620.1 68418.m06270 hypothetical protein
          Length = 229

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 360 WYDKLKTSESRDFITTINR 304
           WYD L    + DFIT  NR
Sbjct: 75  WYDVLAVERTADFITIFNR 93


>At5g50510.1 68418.m06256 hypothetical protein 
          Length = 229

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 360 WYDKLKTSESRDFITTINR 304
           WYD L    + DFIT  NR
Sbjct: 75  WYDVLAVERTADFITIFNR 93


>At4g29090.1 68417.m04163 reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278;
           contains Pfam profile PF00075: RNase H
          Length = 575

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 270 LARLGIVSNNQCIHCQAEEGTIHHIIFDC 184
           LA   +   + CI C + + T++H++F C
Sbjct: 284 LAYRHLSKESACIRCPSCKETVNHLLFKC 312


>At3g02920.1 68416.m00287 replication protein-related similar to
           replication protein A 30kDa [Oryza sativa (japonica
           cultivar-group)] GI:13516746; contains InterPro entry
           IPR004365: OB-fold nucleic acid binding domain
          Length = 278

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 209 RSITLFSIAKVS*FKDLCRHYQISPSFFIHCLNNK 105
           RS+ +FS+  V+ F ++  H+  +   ++H  N K
Sbjct: 134 RSVNVFSVRPVTDFNEIVHHF--TECMYVHMYNTK 166


>At2g23740.1 68415.m02834 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 907

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 115 RQCIK--NEGEI**CLHKSLNYETLAIEN 195
           RQC++  NEG++  C+H +  + T +++N
Sbjct: 196 RQCVRWANEGDVYCCVHLASRFTTKSMKN 224


>At1g21330.1 68414.m02667 hypothetical protein
          Length = 211

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 246 NNQCIHCQAEEGTIHHIIFDCQ 181
           N+ C+ C A   T +H+ F CQ
Sbjct: 83  NSCCVFCHAPVETRNHLFFACQ 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,409,269
Number of Sequences: 28952
Number of extensions: 140691
Number of successful extensions: 341
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)