Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0949
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit...   147   9e-37
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    30   0.22 
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    27   2.0  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    25   8.3  

>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
           Arc21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  147 bits (357), Expect = 9e-37
 Identities = 72/142 (50%), Positives = 100/142 (70%), Gaps = 3/142 (2%)
 Frame = +3

Query: 168 MPAYHST---LTDYSQTVGNLAILPLRTSFRGPAPTSSDIELDIIDEALNYFKANVFFRF 338
           MPAYHS+   LTD   T GN+A+LPL+T FRGPA  + + ++DIIDE +  F+AN FFR 
Sbjct: 1   MPAYHSSFLSLTDVP-TTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRN 59

Query: 339 YEIKSDADRVLIYLTLYVSECLKRLQKCSSKNQGQQEMYMLAISKFDIPGEPGFPLNSVY 518
           +EIK  ADR LIY TL++SECL R+   + ++  ++++  LA+  F IPG  GFPLN++Y
Sbjct: 60  FEIKGPADRTLIYGTLFISECLGRVNGLNYRD-AERQLNSLALENFSIPGSAGFPLNALY 118

Query: 519 ARPTSQQESDLMRQYLQQLRHE 584
           A P S Q++++MR YL Q R E
Sbjct: 119 APPLSPQDAEIMRTYLTQFRQE 140


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 406 KDCRSVPAKIKVNKRCTCWLYPSLTF 483
           K CR++  ++K N +C C L P L F
Sbjct: 43  KKCRAIKQQLKSNLKCVCHLQPFLPF 68


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 501 GNLVPQECQTWI 466
           GNLVPQ+C  WI
Sbjct: 156 GNLVPQQCNLWI 167


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
 Frame = +3

Query: 294 DEALNYFKANVFFRFYEIKSD-ADRVL-IY--LTLYVSECLKRLQKCSSKNQGQQEMYML 461
           D +L++ K      + E+ S+  DR+L  Y   TLYVS  LKR+   S  +  + E++++
Sbjct: 99  DVSLDFEKRMAQDAYKEVMSEYGDRMLPSYHPTTLYVSRVLKRIIAVSGMSDLKWELHVI 158

Query: 462 ---AISKFDIPGEPGFPLNSVYARPTSQQESDLMRQYLQQLRHE 584
                + F +PG   F    +   P  + E  L      +  H+
Sbjct: 159 RDPTPNAFVLPGGKVFVFEGIL--PMCKGEDGLAAVLAHETAHQ 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,980
Number of Sequences: 5004
Number of extensions: 37422
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)