Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0949
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0191 + 7642942-7642944,7643405-7643513,7643578-7643886,764...   123   9e-29
10_08_0002 - 13986969-13989338                                         30   1.6  
06_03_0854 + 25400855-25403741,25406174-25407708                       27   8.5  
01_05_0770 - 25052100-25052525,25052718-25053042,25053220-250534...    27   8.5  

>02_02_0191 +
           7642942-7642944,7643405-7643513,7643578-7643886,
           7644697-7644839
          Length = 187

 Score =  123 bits (297), Expect = 9e-29
 Identities = 62/152 (40%), Positives = 95/152 (62%), Gaps = 15/152 (9%)
 Frame = +3

Query: 177 YHSTLTDYSQTVG--NLAILPLRTSFRGPAPT-------SSDI------ELDIIDEALNY 311
           YHS+  D +         +LPL+T  RGPAP        ++D+      + DI+DEA+ +
Sbjct: 3   YHSSFVDDTGITKACGCPLLPLKTHIRGPAPAFDQEPCQAADLCRAITDKADIVDEAITF 62

Query: 312 FKANVFFRFYEIKSDADRVLIYLTLYVSECLKRLQKCSSKNQGQQEMYMLAISKFDIPGE 491
           F+ANVFF+ + +KS AD++LIYLT Y++  LKRL+ C +   G + +  L + K  +PGE
Sbjct: 63  FRANVFFKNFNVKSPADKLLIYLTFYINIALKRLEGCRTLAVGTKAIINLGLEKVPVPGE 122

Query: 492 PGFPLNSVYARPTSQQESDLMRQYLQQLRHET 587
           PGFP   ++  P SQ+E++L+R YL+Q+R ET
Sbjct: 123 PGFPFPGLFTLPQSQEEAELLRNYLKQIREET 154


>10_08_0002 - 13986969-13989338
          Length = 789

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +3

Query: 123 GLF*KRRLQRSSSDKMPAYHSTLTDYS-QTVGNLAILPLRTSFRGPAPTSSDIELDIIDE 299
           G+F K   ++    K   YH  ++ +  + +G +   P    F    P +  I    ID+
Sbjct: 424 GIFTKDSYEQMIIKKENEYHMNVSAFQLEPIGVVPDFPYVAPFSSSVPDACLIVRSFIDD 483

Query: 300 ALNYFKANVFFRFYE-IKSDADRVLI 374
           ++NY   +     Y+ +K   D++LI
Sbjct: 484 SVNYLSYDPMMDAYDVVKRYLDKLLI 509


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 153 SSSDKMPAYHSTLTDYSQTVGNLAILPLRTSFRGPAPTSSD 275
           SSSD  P   + L+D S  +  + + P   +   PAPT SD
Sbjct: 255 SSSDAAPVPATLLSDASPVIVQVPVPPSSDAAPVPAPTLSD 295


>01_05_0770 -
           25052100-25052525,25052718-25053042,25053220-25053464,
           25053582-25054061
          Length = 491

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 441 QQEMYMLAISKFDIPGEPGFPL-NSVYARPTSQQESDLMRQYLQQLRH 581
           QQE++M AI K  IPG    P  N+        +   ++R  +Q+  H
Sbjct: 225 QQELFMGAIQKISIPGYMSLPTKNNRRMYQIKNEVESIIRDLVQKRMH 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,073,013
Number of Sequences: 37544
Number of extensions: 220491
Number of successful extensions: 549
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)