Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0949
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47145| Best HMM Match : P21-Arc (HMM E-Value=2.29999e-40)          103   8e-23
SB_10752| Best HMM Match : P21-Arc (HMM E-Value=0.23)                  50   2e-06
SB_55992| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-06)                 34   0.076
SB_20260| Best HMM Match : fn3 (HMM E-Value=0)                         29   2.1  
SB_59797| Best HMM Match : Transposase_21 (HMM E-Value=0.015)          29   3.8  
SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_19383| Best HMM Match : Rpr2 (HMM E-Value=0.74)                     29   3.8  
SB_51629| Best HMM Match : NUMOD3 (HMM E-Value=9.8)                    28   6.6  
SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09)              28   6.6  
SB_21275| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_12093| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_47145| Best HMM Match : P21-Arc (HMM E-Value=2.29999e-40)
          Length = 138

 Score =  103 bits (248), Expect = 8e-23
 Identities = 58/124 (46%), Positives = 76/124 (61%)
 Frame = +3

Query: 219 LAILPLRTSFRGPAPTSSDIELDIIDEALNYFKANVFFRFYEIKSDADRVLIYLTLYVSE 398
           +A+LPL +SF+GPAP S D   DI+DE L YFKANVFF+ YEIK                
Sbjct: 1   MALLPLNSSFKGPAP-SGDGSADIVDETLYYFKANVFFKSYEIK---------------- 43

Query: 399 CLKRLQKCSSKNQGQQEMYMLAISKFDIPGEPGFPLNSVYARPTSQQESDLMRQYLQQLR 578
                    SK Q ++EM  LA++ F +PG+ GFPLN++Y +P ++QE+D MR YL QLR
Sbjct: 44  -------IQSKEQAKKEMKTLAMANFHLPGDAGFPLNAMYQKPANKQEADNMRAYLTQLR 96

Query: 579 HETG 590
            E G
Sbjct: 97  QELG 100


>SB_10752| Best HMM Match : P21-Arc (HMM E-Value=0.23)
          Length = 43

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 19/40 (47%), Positives = 31/40 (77%)
 Frame = +3

Query: 426 SKNQGQQEMYMLAISKFDIPGEPGFPLNSVYARPTSQQES 545
           SK Q ++EM  LA++ F +PG+ GFPLN++Y +P ++QE+
Sbjct: 3   SKEQAKKEMKTLAMANFHLPGDAGFPLNAMYQKPANKQEA 42


>SB_55992| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-06)
          Length = 462

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +2

Query: 365 SFNLPNIICIGMSQKTAEVFQQKSRSTRDVHVGYIQV*HSW 487
           +F++PNII I ++ KT E  +++ +   D + G++   H+W
Sbjct: 340 TFHIPNIIMITIAIKTMEFLKKRRKKVMDGNPGFLDKAHAW 380


>SB_20260| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1428

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 204 QTVGNLAILPLRTSFRGPAPTSSDIELDIIDEALNYFKANVFFRF 338
           QT     I+P+ + FR P   S +I + + D+A   FK+    RF
Sbjct: 639 QTQAQEVIIPIVSQFRSPGRRSLEIRITLDDQA-TIFKSGFLLRF 682


>SB_59797| Best HMM Match : Transposase_21 (HMM E-Value=0.015)
          Length = 320

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 391 YRNVSKDCRSVPAKIKVNKRCTCWLYPSLTFLGNQVSRS 507
           +RN  ++C +V  K   +K  + +L+P L +  N+VS+S
Sbjct: 141 HRNKRRECGTVLMKTMRSKSGSLFLHPKLLYCYNKVSKS 179


>SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 920

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = +3

Query: 351 SDADRVLIYL--TLYVSECLKRLQKCSSKNQGQQEMYMLAISKFDIPGEPGFPLNSVYAR 524
           SD + V+  +  TL  +  LKR+++   ++   QE Y  ++S  ++  +    L++ Y +
Sbjct: 711 SDGNAVIPVMQQTLKENSTLKRIRQLQQEHLKLQEQYQKSLSPSELRQQQA--LHADYKQ 768

Query: 525 PTSQQESDLMRQY 563
             +Q   +L RQY
Sbjct: 769 RYNQMRKELQRQY 781


>SB_19383| Best HMM Match : Rpr2 (HMM E-Value=0.74)
          Length = 335

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 391 YRNVSKDCRSVPAKIKVNKRCTCWLYPSLTFLGNQVSRS 507
           +RN  ++C +V  K   +K  + +L+P L +  N+VS+S
Sbjct: 245 HRNKRRECGTVLMKTMRSKSGSLFLHPKLLYCYNKVSKS 283


>SB_51629| Best HMM Match : NUMOD3 (HMM E-Value=9.8)
          Length = 337

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 216 NLAILPLRTSFRGPAPTSSDIELDIIDEALNYFKAN 323
           +L + PL   F+    + S+IE+D+ID  L  F  N
Sbjct: 124 HLMMSPLSKMFKTKGSSMSNIEIDLIDPDLQRFMTN 159


>SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09)
          Length = 207

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
 Frame = +3

Query: 339 YEIKSDADRVLIYLTLYVSECLKRLQKCSSKNQGQQEMYMLAISKFDIP--GEPGFPLNS 512
           YE+ SD   +   L  +  ECL ++    SK         L   K  +P  G  G PLNS
Sbjct: 72  YEVFSDPRTLTACLHSFCKECLHKMLSKRSK----YIHCPLCRKKTAVPRRGVKGLPLNS 127

Query: 513 VYARPTSQQESDLMRQYLQQLRH 581
           V  R      S+ M     + RH
Sbjct: 128 VIRRLVDVHSSEGMTSARHRKRH 150


>SB_21275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = +3

Query: 348 KSDADRVLIYLTLYVSECLKRLQKCSSKNQGQQEMYMLAISKFDIPGEPGFPLNSVYARP 527
           K   DR+L   T  + EC + +     K   ++E   L I K           +    R 
Sbjct: 56  KKAVDRILERRTTEIRECYEIIDNQKMKKSLEEEWIALVIEK-----------DKSLRRK 104

Query: 528 TSQQESDLMRQYLQQLRHET 587
             ++   L R+YLQQL H+T
Sbjct: 105 IEEENEQLKREYLQQL-HKT 123


>SB_12093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 138 RRLQRSSSDKMPAYHSTLTDYSQTVGNLAIL 230
           R LQR  SD MP   S L D+S+ +  L++L
Sbjct: 85  RALQRCRSDTMPLELSALRDWSERLRYLSML 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,221,891
Number of Sequences: 59808
Number of extensions: 262618
Number of successful extensions: 746
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)