Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0948
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   1.1  
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   4.5  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    24   6.0  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    24   6.0  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   7.9  

>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +2

Query: 137 GVEFIHTTWSHCGHPQCVSRGF-FLPRTIRLR 229
           GV+  H  WS   +P  VS  F F P TI  R
Sbjct: 569 GVQNDHAYWSSASNPNNVSGAFRFFPHTIIFR 600


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 46  ASISKFSQVEP--VSSVTGRGLAGFYYRTARLRSRVHP 153
           +S++KF    P  +S+  G G+A  Y   A +R   HP
Sbjct: 31  SSLNKFQYTLPLLISNFAGLGIAFIYCLIAFIREMSHP 68


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 178 MTAMAPGSMDELYSGG 131
           M  M  GSMD+LY+GG
Sbjct: 395 MEYMDAGSMDKLYAGG 410


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 177  IHSAFPEVFFCHVPSGYGMSSPPWCFPSAV 266
            I S    V    VP   G +   WCFP+ V
Sbjct: 970  ICSTLVTVLLVFVPLSLGRAIYAWCFPNVV 999


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 224 AGWYVAKKNLWKRTVDDR 171
           AGW+VAK  + K+ VD R
Sbjct: 15  AGWFVAKSQI-KKPVDQR 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,881
Number of Sequences: 5004
Number of extensions: 28027
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)