Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0948
(351 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 32 0.11
SB_9503| Best HMM Match : Bac_DNA_binding (HMM E-Value=3.3) 32 0.15
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.15
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 29 0.80
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_17711| Best HMM Match : HECT (HMM E-Value=4.9) 27 4.3
SB_36832| Best HMM Match : DTHCT (HMM E-Value=9.3) 27 4.3
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_15571| Best HMM Match : PsiB (HMM E-Value=4.7) 27 5.7
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 26 7.5
SB_3787| Best HMM Match : Pentapeptide_2 (HMM E-Value=3) 26 7.5
SB_53926| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_45200| Best HMM Match : 3_5_exonuc (HMM E-Value=2.3e-07) 26 9.9
SB_43815| Best HMM Match : Cystatin (HMM E-Value=4.7e-06) 26 9.9
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1) 26 9.9
SB_55061| Best HMM Match : Defensin_beta (HMM E-Value=6.9) 26 9.9
SB_43584| Best HMM Match : Cystatin (HMM E-Value=4.7e-06) 26 9.9
SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 26 9.9
SB_8065| Best HMM Match : 3_5_exonuc (HMM E-Value=1.2e-07) 26 9.9
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 32.3 bits (70), Expect = 0.11
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 207 CHVPSGYGMSSPPWCFPSAVTCPSSNEACEEYSM*AAAWLC 329
C P GY + +P C S +C SS ACE +++C
Sbjct: 2147 CSCPQGYRLENPYRCVLSNASCASSEFACESGQCVRKSFVC 2187
>SB_9503| Best HMM Match : Bac_DNA_binding (HMM E-Value=3.3)
Length = 110
Score = 31.9 bits (69), Expect = 0.15
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 333 RDRAKPLPTLSTLHKPRLKKDKSQRSGNTMEGSSFRSRMVRGKKKPLET 187
+ + +PLPTL ++ KP K K+ +E S + ++ K P+ET
Sbjct: 52 KPKLRPLPTLQSIGKPPRKPQKTASLKEVLEKFSNHNVIIAPKPMPIET 100
>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 31.9 bits (69), Expect = 0.15
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 333 RDRAKPLPTLSTLHKPRLKKDKSQRSGNTMEGSSFRSRMVRGKKKPLET 187
+ + +PLPTL ++ KP K K+ +E S + ++ K P+ET
Sbjct: 787 KPKLRPLPTLQSIGKPPRKPQKTASLKEVLEKFSNHNVIIAPKPMPIET 835
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 29.5 bits (63), Expect = 0.80
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 203 FLPRTIRLRNELPSMVFPERCDLSFFKRGL*RVLNV 310
F RTI N LP+++F E C L FK + R+ ++
Sbjct: 847 FFSRTIIQWNNLPALLFNEPCSLPIFKDKISRLTHL 882
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 107 LVFTIAPPASGVEFIHTTWSHCGHP-QC 187
+V+T+ PP SG +I + C P QC
Sbjct: 144 VVYTLLPPLSGARYIRVVATECSPPGQC 171
>SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 176 HPQCVSRGFFLPRTIRLRNELPSMV 250
H Q R + PRT++L N LPS++
Sbjct: 741 HNQNYYRNSYFPRTVKLWNSLPSLM 765
>SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 176 HPQCVSRGFFLPRTIRLRNELPSMV 250
H Q R + PRT++L N LPS++
Sbjct: 244 HNQNYYRNSYFPRTVKLWNSLPSLM 268
>SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 176 HPQCVSRGFFLPRTIRLRNELPSMV 250
H Q R + PRT++L N LPS++
Sbjct: 244 HNQNYYRNSYFPRTVKLWNSLPSLM 268
>SB_17711| Best HMM Match : HECT (HMM E-Value=4.9)
Length = 310
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 231 MSSPPWCFPSAVTCPSSNEACEEYSM*AAAWLCPWHC 341
MSSPPW T P S A + + + C W C
Sbjct: 13 MSSPPWSKSIVKTTPRSFLASRQQRVVYNGFECHWKC 49
>SB_36832| Best HMM Match : DTHCT (HMM E-Value=9.3)
Length = 225
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +1
Query: 100 GLAGFYYRTARL---RSRVHP-YYLEPLRSSTVRFQRF 201
G+ G RT++L SR H YY +++ TV FQ+F
Sbjct: 162 GIPGMKLRTSQLYHHHSRYHNRYYFSSMKTITVTFQKF 199
>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1498
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 216 PSGYGMSSPPWCFPSAVTCPSS 281
PSG +++ WC P VT P S
Sbjct: 124 PSGLELATDYWCVPDPVTTPFS 145
>SB_15571| Best HMM Match : PsiB (HMM E-Value=4.7)
Length = 530
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 216 PSGYGMSSPPWCFPSAVTCPSS 281
PSG +++ WC P VT P S
Sbjct: 259 PSGLELATDYWCVPDPVTTPFS 280
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 318 PLPTLSTLHKPRLKKDKSQRS 256
PLPT TLH+ + K+K RS
Sbjct: 585 PLPTPQTLHEELIPKNKPDRS 605
>SB_3787| Best HMM Match : Pentapeptide_2 (HMM E-Value=3)
Length = 324
Score = 26.2 bits (55), Expect = 7.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 245 WRGAHSVAGWYV 210
WRGAH GWY+
Sbjct: 73 WRGAHFREGWYI 84
>SB_53926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 295 SQASFEEGQVTALGKHHGG-ELIP*PDGTWQKKTS 194
S + E ++TA HG +L P P G+WQ K S
Sbjct: 34 SNPTAEYNELTAEHNEHGRTQLRPGPQGSWQIKKS 68
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +3
Query: 249 CFPSA-VTCPSSNEACEEYSM*AAAWLC 329
C P+A +TC S C A+WLC
Sbjct: 122 CSPTARMTCDPSQHTCNNGQCIKASWLC 149
>SB_45200| Best HMM Match : 3_5_exonuc (HMM E-Value=2.3e-07)
Length = 347
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 110 VFTIAPPASGVEFIHT 157
VFT+ PASGVE ++T
Sbjct: 36 VFTLPSPASGVEVVYT 51
>SB_43815| Best HMM Match : Cystatin (HMM E-Value=4.7e-06)
Length = 303
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -1
Query: 270 KSQRSGNTMEGSSFRSRMVRGKKKPLETHCG*PQWLQVVWMNSTPEAG 127
K R + E + FRS++V G ++ H G +L + + P AG
Sbjct: 230 KCGRKFGSFEATHFRSQVVAGTNYFIKVHVGNGSYLHLRVFQTLPFAG 277
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Frame = +3
Query: 204 FCHVPSGYGMSSPPW----CFPSAVTCPSSNEACEEYS 305
+C +G S W C S CP +AC +YS
Sbjct: 1245 YCPQYKQWGRCSDSWTRQNCQKSCDLCPQQQDACRDYS 1282
>SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1)
Length = 330
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 330 DRAKPLPTLSTLHKPRLKKDKSQRSGNTMEGSSFRSRMVR 211
DR +P+ +T+H D+ + S ++ S FR+R R
Sbjct: 220 DRGRPVYWGTTMHCDSSGSDRERLSSDSQPSSDFRNRRER 259
>SB_55061| Best HMM Match : Defensin_beta (HMM E-Value=6.9)
Length = 350
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +3
Query: 183 SAFPEVFFCHVPSGYGMSSPPWCFPSAVTCPSSNEAC 293
S +P +C+ Y +P +C P+ +C + ++C
Sbjct: 105 SCYPNPDYCNPNPDYCNPNPDYCNPNPDSCNPNPDSC 141
>SB_43584| Best HMM Match : Cystatin (HMM E-Value=4.7e-06)
Length = 306
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -1
Query: 270 KSQRSGNTMEGSSFRSRMVRGKKKPLETHCG*PQWLQVVWMNSTPEAG 127
K R + E + FRS++V G ++ H G +L + + P AG
Sbjct: 233 KCGRKFGSFEATHFRSQVVAGTNYFIKVHVGNGSYLHLRVFQTLPFAG 280
>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
Length = 878
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 207 CHVPSGYGMSSPPWCFPSAVTCPSSNEACE 296
C +PS + C PS TC +E C+
Sbjct: 755 CPLPSAVCCADMQHCCPSGYTCNDKSEHCQ 784
>SB_8065| Best HMM Match : 3_5_exonuc (HMM E-Value=1.2e-07)
Length = 317
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 110 VFTIAPPASGVEFIHT 157
VFT+ PASGVE ++T
Sbjct: 52 VFTLPSPASGVEVVYT 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,197,348
Number of Sequences: 59808
Number of extensions: 238577
Number of successful extensions: 712
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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