Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0946
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    28   0.49 
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    27   1.1  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   8.0  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    24   8.0  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       24   8.0  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    24   8.0  

>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = -3

Query: 315 YSRRQVVCNLWSSSTHCSCLSL--DYFVILQSMLFWFLHYSHYYTLQQNCFTK--QHMSE 148
           + RR      W SS   +  +L   +F I    +FW +   +Y  L   CF +  QHM +
Sbjct: 109 FIRRLPEFKFWYSSMRATLFALVASFFRIFDVPVFWPILVVYYLVLSFFCFRRQIQHMLK 168

Query: 147 Y 145
           Y
Sbjct: 169 Y 169


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
 Frame = -3

Query: 384 IVTISIHSCIDNWPAW*KIVFWIYSRRQVVCNLWSS--STHCSCLSLDYFVILQSMLFWF 211
           IVTI   S   N P   K+   I+    +V  L S   +  C C      ++   +  WF
Sbjct: 193 IVTIEFDSFNSNVPVTLKLQRQIFLSFSIVYGLISLWWAIRCICSRTKLHLVQVCLFCWF 252

Query: 210 LHYSHYYTLQQNCFTKQHMSEYI 142
             +   + ++Q  F+  +  EY+
Sbjct: 253 SFFILNHPVKQRIFSIDNPDEYL 275


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 236 YSNLCYFGFYITLTITPCS 180
           YS LC+  F+  L   PCS
Sbjct: 36  YSILCFLSFFALLLHLPCS 54


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 249 DYFVILQSMLFWFLHYSHYYTLQQNCFTKQH 157
           + F +  SML + +HY+ Y+ + + C   +H
Sbjct: 106 ELFSVFFSMLNFMIHYNGYH-IMRRCIPDEH 135


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -3

Query: 294 CNLWSSSTHCSCLSLDYFVILQSMLFW 214
           C  W+    C  +++DY V++     W
Sbjct: 383 CGQWAGKLFCLLIAIDYLVMVLLEWIW 409


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 282 SSSTHCSCLSLDYF 241
           SS+ HC C SL YF
Sbjct: 247 SSARHCLCWSLPYF 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,928
Number of Sequences: 5004
Number of extensions: 32359
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)