Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0946
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0816 - 21499417-21499627,21502965-21503317,21505461-215056...    28   3.3  
01_06_1076 + 34359922-34360452                                         28   3.3  
05_04_0119 - 18169729-18169887,18170515-18170653,18170728-181709...    27   4.4  
01_05_0160 + 18751512-18751960,18752082-18752553                       27   4.4  

>08_02_0816 -
           21499417-21499627,21502965-21503317,21505461-21505649,
           21505819-21505973,21506026-21506245
          Length = 375

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = -2

Query: 127 LLVNNPLV---INASVYLLLEYLKSSASKF 47
           +LV  PL+   +NASV  +L+YL  SASKF
Sbjct: 219 VLVIGPLLQPTVNASVAHILKYLDGSASKF 248


>01_06_1076 + 34359922-34360452
          Length = 176

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 231 GVSQNNPN*DRNNEYWRTTSCKQLAAWSKSRKQ 329
           G+ +N+ + DRN++  + T+ + L  W + R+Q
Sbjct: 144 GIDRNDDDLDRNDDDLQMTTARWLRGWWRGRRQ 176


>05_04_0119 -
           18169729-18169887,18170515-18170653,18170728-18170974,
           18171585-18171968,18172251-18172540,18172884-18173295,
           18173409-18173420,18173943-18174135
          Length = 611

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 276 STHCSCLSLDYFVILQSMLFWFLHYSHYYTLQQNCFTKQHMSEYIKIIYPYSLII 112
           S H  C     +     +L  F  +SHY + +++C  +  M E  +II P   II
Sbjct: 509 SYHDWCEPFSTYPRTYDLLHAFHIFSHYQSRKEDCSLEDIMLEMDRIIRPEGFII 563


>01_05_0160 + 18751512-18751960,18752082-18752553
          Length = 306

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 259 TGTMSTGGPQVANNLPPGVNPENNFLPGG 345
           TG  +TG P  A   PPG+   ++  PGG
Sbjct: 224 TGHQATGNPAAAALGPPGMKHHHHHHPGG 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,934,449
Number of Sequences: 37544
Number of extensions: 175638
Number of successful extensions: 395
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)