Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0946
(410 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36990| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 27 4.5
SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023) 27 4.5
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011) 27 4.5
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37) 27 4.5
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0) 27 6.0
SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_25939| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
>SB_36990| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 145 YQNHLSLLVNNPLVINASVYLLLEYLKSSA 56
Y N S VNNP+++ Y+ L +K+SA
Sbjct: 85 YANENSYGVNNPIIVRVKFYVDLRTIKNSA 114
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 271 STGGPQVANNLPPGVNPENNFLPGGPVINAGM 366
+TGGP N P +PE GGPV G+
Sbjct: 512 ATGGPFYLTNTVPVSHPELEDASGGPVAGGGV 543
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 291 NLWSSSTHCSCLSLDYFVILQSMLFWFLHYSHYYTLQQNCFTKQH 157
N + T SCLS + IL S L+ +L Y +Q F K+H
Sbjct: 1345 NNYRGITLLSCLSKLFTSILNSRLYDYLVQKGYLKKEQGGFRKKH 1389
>SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
Length = 836
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 291 NLWSSSTHCSCLSLDYFVILQSMLFWFLHYSHYYTLQQNCFTKQH 157
N + T SCLS + IL S L+ +L Y +Q F K+H
Sbjct: 702 NNYRGITLLSCLSKLFTSILNSRLYDYLVQKGYLKKEQGGFRKKH 746
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 291 NLWSSSTHCSCLSLDYFVILQSMLFWFLHYSHYYTLQQNCFTKQH 157
N + T SCLS + IL S L+ +L Y +Q F K+H
Sbjct: 1065 NNYRGITLLSCLSKLFTSILNSRLYDYLVQKGYLKKEQGGFRKKH 1109
>SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 3 AGIGTRNIKESDHFVNFDALLFKYSNNKYTEAFITSGLLTSKDK 134
A IGT N+ D + L+F S NK +G +TS +K
Sbjct: 522 AAIGTLNVFVKDSVNGTETLIFTKSGNKGNSWIPGNGTITSSNK 565
>SB_27722| Best HMM Match : RVT_1 (HMM E-Value=0.00011)
Length = 315
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 291 NLWSSSTHCSCLSLDYFVILQSMLFWFLHYSHYYTLQQNCFTKQH 157
N + T SCLS + IL S L+ +L Y +Q F K+H
Sbjct: 101 NNYRGITLLSCLSKLFTSILNSRLYDYLVQKGYLKKEQGGFRKKH 145
>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 291 NLWSSSTHCSCLSLDYFVILQSMLFWFLHYSHYYTLQQNCFTKQH 157
N + T SCLS + IL S L+ +L Y +Q F K+H
Sbjct: 328 NNYRGITLLSCLSKLFTSILNSRLYDYLVQKGYLKKEQGGFRKKH 372
>SB_22389| Best HMM Match : RVT_1 (HMM E-Value=1.6e-37)
Length = 458
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 291 NLWSSSTHCSCLSLDYFVILQSMLFWFLHYSHYYTLQQNCFTKQH 157
N + T SCLS + IL S L+ +L Y +Q F K+H
Sbjct: 101 NNYRGITLLSCLSKLFTSILNSRLYDYLVQKGYLKKEQGGFRKKH 145
>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
Length = 192
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 313 VNPENNFLPGGPVINAGM 366
+NP NF+ GGPV +AG+
Sbjct: 119 INPTGNFVIGGPVGDAGL 136
>SB_9580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 324 FWIYSRRQVVCNLWSSSTHCS 262
F+ RRQ C LW+SS CS
Sbjct: 60 FYRQRRRQGRCGLWASSPRCS 80
>SB_25939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -3
Query: 276 STHCSCLS---LDYFVILQSMLFWFLHYSHYYTLQQ 178
S C CL L + ILQ++L+WFL S +Q
Sbjct: 328 SRFCRCLFVIVLSFLPILQALLYWFLKKSEVGITEQ 363
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,947,473
Number of Sequences: 59808
Number of extensions: 218000
Number of successful extensions: 546
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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