Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0946
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    28   2.3  
Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF039049-4|AAB94250.2|  293|Caenorhabditis elegans Serpentine re...    27   5.3  
Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF045639-3|AAL11098.1|  383|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z81474-7|CAH60750.1|  305|Caenorhabditis elegans Hypothetical pr...    26   9.2  
U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -3

Query: 285 WSSSTHCSCLSLDYF--VILQSMLFWFLHYSHYYTLQQNCFTKQHMSEY 145
           +SS T  S  S  +   V++  +L  +++Y H YTL +N     H++++
Sbjct: 14  YSSDTSSSLYSQTWLASVVIIGLLVGYINYQHVYTLFENDKHFSHLADF 62


>Z82264-5|CAB05156.1|  404|Caenorhabditis elegans Hypothetical
           protein C49C3.11 protein.
          Length = 404

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 261 CLSLDYFVILQSMLFWFLHYSHYYTLQQNCFTKQHMSEYIKIIYPYSLI 115
           CL L     +  ++F   +Y   Y LQ   F+K+ +S    I+ PYS I
Sbjct: 75  CLWLLIIFFVGCLIFTLFYYDDRYILQIQLFSKRSVSTK-TILKPYSSI 122


>AF039049-4|AAB94250.2|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein65 protein.
          Length = 293

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = -3

Query: 408 DIEQWILIIVTISIHSCIDNWPAW---*KIVFWIYSRRQVVCNLWSSSTHCSCLSLDYFV 238
           D++Q +L++V ISI   + NW ++    K+  + +S   +  N   +    S + L YF 
Sbjct: 3   DVDQILLVLVPISIVGAVLNWSSFYSICKLTSYKHSFGYLSANQALADALHSTIFLLYFC 62

Query: 237 ILQSMLFWFL-HYSHY 193
            +  +   FL  YSH+
Sbjct: 63  PMALLDHSFLKQYSHF 78


>Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical
           protein F41E7.6 protein.
          Length = 557

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 298 CLQLVVLQYSLFLS*FGLFCDTPIYVI 218
           CL+L +++YS+F S    +CD  + +I
Sbjct: 286 CLKLQLMKYSIFGSPLNAYCDKNLNII 312


>AF045639-3|AAL11098.1|  383|Caenorhabditis elegans Hypothetical
           protein B0212.4b protein.
          Length = 383

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 329 IFYQAGQLSMQE*IEIVTIIKIHCSM 406
           IFYQ   +  Q  ++ +TII++ CS+
Sbjct: 10  IFYQMSSMERQNELQKITIIRVICSV 35


>Z81474-7|CAH60750.1|  305|Caenorhabditis elegans Hypothetical
           protein C18D4.5 protein.
          Length = 305

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 139 NHLSLLVNNPLVINASVYL 83
           NHL LL N+P ++N  +Y+
Sbjct: 2   NHLGLLQNSPTLLNQIIYI 20


>U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical
           protein F07C3.3 protein.
          Length = 791

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 236 YSNLCYFGFYITLTITPCSKIVL 168
           Y N+C+FGF    T+T  + +VL
Sbjct: 481 YRNICHFGFTFVTTLTHEAGLVL 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,221,414
Number of Sequences: 27780
Number of extensions: 181088
Number of successful extensions: 448
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)