Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0946
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi...    29   1.2  
At5g49780.1 68418.m06165 leucine-rich repeat transmembrane prote...    27   4.9  
At1g30515.1 68414.m03733 expressed protein                             27   4.9  
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative...    27   6.5  
At4g05470.1 68417.m00829 F-box family protein (FBL21) contains s...    26   8.6  
At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase compon...    26   8.6  

>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 682

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 271 STGGPQVANNLPPGVNPENNFLPGGPVINAGM 366
           S GG   A +  PGV P  N  P G ++  GM
Sbjct: 137 SRGGGSGATSPNPGVLPTGNICPSGRILKTGM 168


>At5g49780.1 68418.m06165 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1006

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 9   IGTRNIKES--DHFVNFDALLFKYSNNKYTEAFITS 110
           +  RNI+E   DH++  D  LF Y  +++ E  + S
Sbjct: 538 VAIRNIREDEDDHYLLIDLSLFPYKQDRFNETGMDS 573


>At1g30515.1 68414.m03733 expressed protein
          Length = 144

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 157 MLLRKTILLQGVIVRVM*-KPK*HRLEYHKIIQTKTGTMSTGGPQVANNLPPGVNPENNF 333
           ML+   I+L+  I+     +P  H LEY+      +   S  GP  +N+L    +P ++ 
Sbjct: 15  MLIMFIIVLESTIINARELRPSDHGLEYYYEPGESSEMTSFFGPPSSNDLTSISSPSSSI 74

Query: 334 LP 339
           LP
Sbjct: 75  LP 76


>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
           (UBP5) similar to GI:6648604
          Length = 924

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 206 ITLTITPCSKIVLRSNICLNISK 138
           IT+T+  C K  L S I +N+SK
Sbjct: 503 ITVTVFSCDKTALPSTITVNVSK 525


>At4g05470.1 68417.m00829 F-box family protein (FBL21) contains
           similarity to N7 protein GI:3273101 from [Medicago
           truncatula]
          Length = 576

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 101 KCFRIFVIGILKK*CIKIHK 42
           KCFRI ++G L+K C+++ K
Sbjct: 540 KCFRISLVGNLEKRCLEMIK 559


>At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase component
           family protein / Gpi1 family protein similar to
           SP|O14357 N-acetylglucosaminyl-phosphatidylinositol
           biosynthetic protein gpi1 {Schizosaccharomyces pombe};
           contains Pfam profile PF05024: N-acetylglucosaminyl
           transferase component (Gpi1)
          Length = 560

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = -3

Query: 333 KIVFWIYSRRQVVCNLWSSSTHC 265
           +++ W+  R++  C +W    HC
Sbjct: 429 EVMIWLVRRKRFPCGVWFEMEHC 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,422,311
Number of Sequences: 28952
Number of extensions: 155623
Number of successful extensions: 350
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)