Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0945
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   1.2  
SB_57480| Best HMM Match : MFS_1 (HMM E-Value=0.0025)                  28   4.8  

>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1741

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/82 (24%), Positives = 36/82 (43%)
 Frame = -1

Query: 269  NLMFPKRSEGGSLVLNKLIKVYCFFCVITDIAQAKHALITPRSDRFVHKYTRRIYRENND 90
            +L + K       V+ KL K   + C I     +K +L   +  R  H+   +I     +
Sbjct: 802  SLNYSKDDSTVDFVVKKLPKRPGYHCNICGAGFSK-SLTLKKHQRKTHRRKNKILSSAKN 860

Query: 89   VKSQILNDFPHSPRLNPICVSL 24
              S+++  FP S  +NP  +S+
Sbjct: 861  SSSKLMETFPKSKTINPQSISV 882


>SB_57480| Best HMM Match : MFS_1 (HMM E-Value=0.0025)
          Length = 930

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = +1

Query: 175 AISVITQKKQ*TFINLFNTSDPPSLRFGNIKFYY**LSPAMLSAVIVVPRMTPR 336
           +I+VI    + +   LFNT  P S+RFG   F +  LS A++    V+ R  PR
Sbjct: 757 SITVIQTLMELSGTLLFNTIYPESMRFGMPGFVF-FLSAAIMFIPFVILRSLPR 809


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,863,523
Number of Sequences: 59808
Number of extensions: 327905
Number of successful extensions: 615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)