Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0945
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-3|AAL27233.2|  420|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC091125-1|AAK27889.2|  313|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U58747-3|AAL27233.2|  420|Caenorhabditis elegans Hypothetical
           protein C55F2.1a protein.
          Length = 420

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 480 KNVILVYVPYIYSYSCSKKRLFQYYKQTL 566
           K+ +L ++   + Y+C KK LFQ  KQ +
Sbjct: 215 KHFMLSFLQNFHKYNCIKKSLFQLNKQAI 243


>AC091125-1|AAK27889.2|  313|Caenorhabditis elegans Hypothetical
           protein Y67D2.4 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = -1

Query: 194 CVITDIAQAKHALITPRSDRFVHK--YT---RRIYRENNDVKSQILNDFPHSPRLN 42
           C + D+ + KH +     +R V K  +T   +R+ R  NDVK  +L+   ++PR N
Sbjct: 54  CDLIDMKKYKHQIEDYYYERGVQKVLFTDCKKRLPRALNDVKLSMLDALENTPRFN 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,413,443
Number of Sequences: 27780
Number of extensions: 243773
Number of successful extensions: 555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)