Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0945
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19660.1 68415.m02297 DC1 domain-containing protein contains ...    29   2.2  
At5g56390.1 68418.m07039 F-box family protein contains F-box dom...    29   2.9  
At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo...    27   9.0  

>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 662

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 99  LTINTARVLMHETIGTWCD*CVFRLCNISYYTKKTID 209
           L IN    ++HE+  T C  CVF++C+ ++Y+ +  D
Sbjct: 378 LVINKDGRILHES--TLCKACVFQICSDAFYSCENCD 412


>At5g56390.1 68418.m07039 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 428

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 98  NNDVKSQILNDFPHSPRLNPICV 30
           ++D K ++LNDFP S R +P C+
Sbjct: 399 DHDKKLEMLNDFPVSSRRSPACM 421


>At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low
           similarity to mannosidase [gi:5359712] from Cellulomonas
           fimi
          Length = 944

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 464 LFVPANLWNGWADFDGTFTD 405
           +++  ++W+G+AD  G FTD
Sbjct: 506 VYIQGSMWDGFADGKGNFTD 525


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,476,279
Number of Sequences: 28952
Number of extensions: 217497
Number of successful extensions: 447
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)