Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0944
(575 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45) 30 1.6
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 29 2.1
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058) 29 3.6
SB_58977| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_47175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_41854| Best HMM Match : FA_hydroxylase (HMM E-Value=2.8) 27 8.3
SB_24448| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 27 8.3
SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06) 27 8.3
SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 30.7 bits (66), Expect = 0.89
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 290 EGYTPKYWEYHRHPITRFIAR---YIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKK 460
E +P W H++ + R YI + DY+ F HF + + + R+L K+ +KK
Sbjct: 21 EDDSPIDWSEHKYTLDHLFFRDNDYIKRGTE-DYKDFWHFFERYESFQRKRSLSKKDVKK 79
>SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 267 RRN*HLSLKDIRPNTGSTTAIQSPDLLLAIFTTIHNRIMRNLCISLMKN 413
RR L L D+R N+ T ++S L ++ + NLC+SL+++
Sbjct: 491 RRLISLDLSDVRLNSIETATLRSAGQLAVLYVLAGGLGLNNLCVSLVRS 539
>SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)
Length = 727
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 191 MLHFYMMVGLIPAGALIFYCNVFIGPAQLTPIPEGY 298
+L F++++G++ +LIFYC I + IP +
Sbjct: 432 LLIFFLLIGVVLFASLIFYCEKKIPGTKFVDIPSSF 467
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 278 TPIPEGYTPKYWEYHRHPITRFIARYIHNNPQ 373
TP+P +TP+ R PI + +HN+P+
Sbjct: 282 TPLPAYFTPRVIHSPRTPIPAYFTPRVHNSPR 313
>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
Length = 1187
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/43 (27%), Positives = 28/43 (65%)
Frame = +2
Query: 377 DYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQDYQAYYYKPM 505
DY++ + +D+E+ R++ R L+++ K+ +R++ +A K M
Sbjct: 905 DYDEILRSVDDERNRVQ-RLLDEDEAKRKRQREEEEAKRKKKM 946
>SB_58977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 338 RFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQDYQAYYYKPMVNKY 517
R +A+ + + +DY + + D+E++R + EK+ ++ AER+ QA K V K
Sbjct: 31 RSLAQTLRDEQDEDYRRSLQ-ADQEKERRRREEQEKKQKEEEAERRKKQAILEKLEVIKM 89
Query: 518 LRMN 529
N
Sbjct: 90 ATNN 93
>SB_47175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1088
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 431 RALEKEIIKKMAERQDYQAYYYKPMVNKYLRMNKRTGDELYNR 559
RA K + + A R++ A+Y + + KYL N+R +E NR
Sbjct: 141 RARVKALAEAKAAREE--AHYERLIAKKYLERNEREAEEEINR 181
>SB_41854| Best HMM Match : FA_hydroxylase (HMM E-Value=2.8)
Length = 476
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +2
Query: 272 QLTPIPE-GYTPKYWEYHRHPITRFIARY--IHNNPQQDY 382
Q T P GY Y+ HR P T + Y +H +P Y
Sbjct: 410 QTTSTPTTGYIDTYYRVHRSPTTGYFDTYYRVHRHPTTGY 449
>SB_24448| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 282
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +2
Query: 350 RYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQDYQAYYYKPMVNKY 517
+YI+N Y + + +E+ +KL K M R + Y Y P +KY
Sbjct: 53 KYIYNPKTHKY-CYGRIIPKEKHCVKLPRCGKRFYNPMKYRCAHNKYIYNPKTHKY 107
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +2
Query: 350 RYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQDYQAYYYKPMVNKY 517
+YI+N Y + + + +Q +KL K M R + Y Y P +KY
Sbjct: 141 KYIYNPKTHKY-CYGRIIPKREQCLKLPRCGKRFYNPMKYRCAHNKYIYNPKTHKY 195
>SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06)
Length = 1098
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 282 LSLKDIRPNTGSTTAIQSPDLLLAIFTTIHNRIMRN 389
+S D+ +TGS T + D+L++ +T R++RN
Sbjct: 1033 MSFLDVLVSTGSATLMSCLDVLVSTGSTTRLRVLRN 1068
>SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 282 LSLKDIRPNTGSTTAIQSPDLLLAIFTTIHNRIMRN 389
+S D+ +TGS T + D+L++ +T R++RN
Sbjct: 81 MSFLDVLVSTGSATLMSCLDVLVSTGSTTRLRVLRN 116
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,865,735
Number of Sequences: 59808
Number of extensions: 444679
Number of successful extensions: 1206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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