Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0944
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61780.1 68416.m06931 expressed protein ; expression supporte...    33   0.14 
At5g09740.1 68418.m01128 histone acetyltransferase, putative sim...    31   0.73 
At1g80070.1 68414.m09373 splicing factor, putative strong simila...    28   3.9  
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ...    28   5.1  
At1g11720.1 68414.m01345 starch synthase, putative strong simila...    27   6.8  
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi...    27   9.0  
At4g38780.1 68417.m05491 splicing factor, putative strong simila...    27   9.0  
At3g43990.1 68416.m04709 bromo-adjacent homology (BAH) domain-co...    27   9.0  

>At3g61780.1 68416.m06931 expressed protein ; expression supported by
            MPSS
          Length = 1121

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
 Frame = +2

Query: 50   NLVKNSLK---SPNKIQNVTFTTAKTLKGS--HGERTMALQPSRWQWHKFKDMLHFYMMV 214
            N VK S K   S NKI+   F  AK+  G   H E+        W  + + +   F  +V
Sbjct: 587  NAVKGSSKQINSSNKIEEHNFKFAKSSSGGTEHIEKEEPSGKGNWIENNYHE---FEPVV 643

Query: 215  GLIPAGALIFYCNVFIG----PAQLTPIPEGYTPKY---WEYHRHPITRFIARYIHNNPQ 373
              + AG    Y     G    P  +  I E Y  +Y    E+ +    R I  ++ +N  
Sbjct: 644  EKMRAGFRDNYMAAREGETREPGTIAEIAELYRSEYNDELEWMKDEKLRDIVFHVRDNEL 703

Query: 374  QDYEKFMHFLDEEQQRIKLRALEKEIIKK 460
               + F H +D+E + + L+ LEK++ K+
Sbjct: 704  AGRDPF-HLIDDEDKAMFLQGLEKKVEKE 731


>At5g09740.1 68418.m01128 histone acetyltransferase, putative
           similar to histone acetyltransferase [Homo sapiens]
           gi|8317213|gb|AAF72665
          Length = 445

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 326 HPITRFIARYIHNNPQQDYEKFMHFLD 406
           HP+     R IHN  Q DYE ++H+ +
Sbjct: 76  HPVKVIERRRIHNGGQNDYEYYVHYTE 102


>At1g80070.1 68414.m09373 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2382

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +2

Query: 389 FMHFLDEEQQRIKLRALEKEIIKKM-AERQDYQAYYYKPMVNKYLRMNKRTGDELYNRIG 565
           F H  +   +++KL      +I  +  E  D  A+YY P+++     NK   +       
Sbjct: 362 FPHLYNNRPRKVKLCVYHSPMIMYIKTEDPDLPAFYYDPLIHPISNTNKEKRERKVYDDE 421

Query: 566 DDY 574
           DD+
Sbjct: 422 DDF 424


>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 641

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/40 (25%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +2

Query: 374 QDYEKFMHFLDEEQQRIK-LRALEKEIIKKMAERQDYQAY 490
           +D+ ++  ++++E  ++K +  +EK + K + ER+D ++Y
Sbjct: 562 EDHRRYSVYINKEDVKLKRVNVIEKLMSKTLREREDMRSY 601


>At1g11720.1 68414.m01345 starch synthase, putative strong
           similarity to soluble-starch-synthase [Solanum
           tuberosum] GI:1911166
          Length = 1025

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 5   IRHEAWSALGRSFGINLVKNSLKSPNKIQNVTFTTAKTLKGSHGER 142
           I+H  W  L R+  + L+  S   P +IQN     A  L  SHG+R
Sbjct: 847 IKHAIWRTLERNGQVVLL-GSAPDP-RIQNDFVNLANQLHSSHGDR 890


>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
           transporter ZIP2 [Arabidopsis thaliana]
           gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
           (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 353

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 248 CNVFIGPAQLTPIPEGYTPKYWEYHRHPITRFIARYI 358
           C VF+  A    I +GY P+   Y   PI +FIA ++
Sbjct: 305 CGVFVYVAVNHLISKGYKPREECYFDKPIYKFIAVFL 341


>At4g38780.1 68417.m05491 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2332

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +2

Query: 389 FMHFLDEEQQRIKLRALEKEIIKKM-AERQDYQAYYYKPMVNKYLRMNKRTGDEL----Y 553
           F H  +   +++KL      ++  +  E  D  A+YY P+++     N    ++     Y
Sbjct: 310 FPHLYNNRPRKVKLCVYHTPMVMYIKTEDPDLPAFYYDPLIHPISNSNNTNKEQRKSNGY 369

Query: 554 NRIGDDY 574
           +  GDD+
Sbjct: 370 DDDGDDF 376


>At3g43990.1 68416.m04709 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 380

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/48 (22%), Positives = 26/48 (54%)
 Frame = +2

Query: 341 FIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQDYQ 484
           FI + +++N ++   KF H   EE+Q+ ++  L  + + ++    D +
Sbjct: 185 FIVQMVYDNVRKKVRKFSHEGFEEEQKFEIDMLVAKTVSRIGNLVDVE 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,854,243
Number of Sequences: 28952
Number of extensions: 312019
Number of successful extensions: 741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)