Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0942
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2) iden...    33   0.13 
At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic...    32   0.29 
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC...    31   0.51 
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP...    29   2.7  
At3g18900.1 68416.m02400 expressed protein contains Pfam profile...    28   6.2  

>At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2)
           identical to acyl-CoA binding protein 2 [Arabidopsis
           thaliana] gi|12039034|gb|AAG46057
          Length = 354

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 655 LDLKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGL 554
           L +  +AK+ AW KL     E+A + YIEIV  L
Sbjct: 155 LKMTARAKWQAWQKLGAMPPEEAMEKYIEIVTQL 188


>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
           to acyl-CoA-binding protein (ACBP) [Arabidopsis
           thaliana] SWISS-PROT:P57752
          Length = 92

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 649 LKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGLI 551
           +K +AK+DAW  + G S E+A   YI  V+ L+
Sbjct: 51  MKERAKWDAWKAVEGKSSEEAMNDYITKVKQLL 83


>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
           putative similar to acyl-CoA binding protein 2
           [Arabidopsis thaliana] gi|12039034|gb|AAG46057
          Length = 338

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 655 LDLKGKAKFDAWHKLAGTSKEDAQKAYIEIVEGL 554
           L +  +AK+ AW KL     E+A + YI++V  L
Sbjct: 145 LKMTARAKWQAWQKLGAMPPEEAMEKYIDLVTQL 178


>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
           SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
           subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
           epsilon subunit) {Homo sapiens}; contains Pfam profile:
           PF01602 Adaptin N terminal region
          Length = 938

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 197 LNQNKYKTERPSTCILLKHDFEKDASYFIAV 289
           +N N YKTE  S C+ L   F     +FI +
Sbjct: 409 INDNHYKTEIASRCVELAEQFAPSNQWFIQI 439


>At3g18900.1 68416.m02400 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547; contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 815

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 218 TERPSTCILLKHDFEKDASYFIAVQYYALAPWKYRS 325
           TE P T  LLK DF  + S  + + Y++L   ++ +
Sbjct: 649 TETPRTISLLKFDFSIEKSVLVPLPYHSLQSRRFEA 684


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,874,336
Number of Sequences: 28952
Number of extensions: 175988
Number of successful extensions: 372
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)