Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0941
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...    27   1.1  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   4.6  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   6.1  

>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 64  PGAD*TRPRPTVYRSRATSLRKTREFRKSIE 156
           PG    RPR   YR   T+LR+ R++++S +
Sbjct: 10  PGDPIPRPRKKRYRPGTTALREIRKYQRSTD 40


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 302 NGSAGDVDDYEYFTGGQPTIILPSSNRS 385
           N  A DVDD+  F G Q T+ L S   S
Sbjct: 724 NTIASDVDDFGTFNGLQRTVSLHSERAS 751


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 38  QSPDVR--PEHLVQTRPVQGRPSTEAER 115
           QSP  +  P HLVQ+ PVQ + + + +R
Sbjct: 320 QSPKAQQPPAHLVQSAPVQRKTTPKIQR 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,778
Number of Sequences: 5004
Number of extensions: 34884
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)