Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0941
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0239 - 21794691-21795986                                         29   2.0  
07_03_1176 + 24567720-24570932                                         29   2.6  
05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453     27   8.0  
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067     27   8.0  

>09_06_0239 - 21794691-21795986
          Length = 431

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 335 YFTGGQPTIILPSSNRSDQNTCGRVMLNRPIPLVLNGVPTLEGQW 469
           +F GG   ++LP ++   +++ G ++     P   NGVP L G W
Sbjct: 357 HFDGGAADLVLPPASYLAKDSAGGLICLTMTPSSSNGVPVL-GSW 400


>07_03_1176 + 24567720-24570932
          Length = 1070

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 314 GDVDDYEYFTGGQPTIIL 367
           GDVDD+ YF GG P  ++
Sbjct: 293 GDVDDFNYFQGGIPDAVV 310


>05_06_0075 - 25379820-25380776,25380851-25381179,25381255-25381453
          Length = 494

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 56  PEHLVQTRPVQGRPSTEAERPVYVKPVN 139
           P H  Q RPVQ RP    + P   +PV+
Sbjct: 343 PAHSFQPRPVQRRPVLVGQAPPQRRPVH 370


>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
          Length = 1064

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +2

Query: 290  HHDDNGSAGDVDDYEYFTGGQPTIILPSSNRSDQNTCGRVMLNRPIPLVLNGVPTLEG 463
            H DD+  AGDVDD +    G P+ I       D    G       +  +   V TL+G
Sbjct: 913  HDDDDNDAGDVDDDD---DGVPSDITHEGGGDDSGEHGHSHHRLLLESIATRVVTLDG 967


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,297
Number of Sequences: 37544
Number of extensions: 283724
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)