Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0941
(486 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.041
SB_30267| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.50
SB_10327| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.67
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2) 29 2.7
SB_57999| Best HMM Match : DUF512 (HMM E-Value=1.2) 28 3.6
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_29414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 27 8.2
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 27 8.2
SB_33589| Best HMM Match : Trypsin (HMM E-Value=0) 27 8.2
SB_30263| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 34.7 bits (76), Expect = 0.041
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +2
Query: 302 NGSAGDV--DDYEYFT-GGQPTIILPSSNRSDQNTCGRVMLNRPIPL--VLNGVPTLEGQ 466
NG + D+ DD + GGQP P +NR G PI V+ G + G
Sbjct: 428 NGWSSDIAIDDVSVESCGGQPNTPQPPTNRPTAPPGGLKCGYTPITQSRVIGGKDAIPGA 487
Query: 467 WPWQIA 484
WPWQIA
Sbjct: 488 WPWQIA 493
>SB_30267| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 282
Score = 31.1 bits (67), Expect = 0.50
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 395 TCGRVMLNRPIPLVLNGVPTLEGQWPWQ 478
TCGR + P V++G L G+WPWQ
Sbjct: 21 TCGRAEV--PATRVISGSEALLGEWPWQ 46
>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 865
Score = 30.7 bits (66), Expect = 0.67
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 383 SDQNTCGRVMLNRPIPLVLNGVPTLEGQWPWQIA 484
+D +CGR P ++NG + WPWQ++
Sbjct: 224 NDPGSCGRRSEKTPPLRIVNGEDAVPHSWPWQLS 257
>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 29.1 bits (62), Expect = 2.0
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +2
Query: 425 IPLVLNGVPTLEGQWPWQIA 484
+P+++ G G+WPWQ++
Sbjct: 543 MPMIMGGANAEHGEWPWQVS 562
>SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1830
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 171 RYLLSRIIRIRTEGLRTTILGSLLRRPRTVHPRNSLAHHN 290
RY+L+ + R+ G +LGSL + P P+ + H+
Sbjct: 1715 RYILAEVAATRSHGRLGAVLGSLAKHPDLFGPQAASGRHS 1754
>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 365 LPSSNRSDQNTCGRVMLNRPIPLVLNGVPTLEGQWPWQ 478
L SSNR + T ML +P V+NG+P L W W+
Sbjct: 71 LCSSNRGCERTGEDSML---LPSVVNGLPVLVEPWRWK 105
>SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2)
Length = 157
Score = 28.7 bits (61), Expect = 2.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 434 VLNGVPTLEGQWPWQIA 484
++ GV + EG WPWQ+A
Sbjct: 54 IVGGVVSSEGLWPWQVA 70
>SB_57999| Best HMM Match : DUF512 (HMM E-Value=1.2)
Length = 247
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +1
Query: 52 SSRAPGAD*TRPR---PTVYRSRATSLRKTREFRKSIEHF 162
S+R PG D R PTV ++ +T FR++IEHF
Sbjct: 89 SARTPGLDFLRSYLFLPTVLLTQLIYACRTARFRRAIEHF 128
>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1495
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 221 CSKALCPDSDYTTEKIPLHPKCSMDL 144
C+K++CP ++ T E KCS DL
Sbjct: 519 CNKSICPGAEATFEMRFTEEKCSQDL 544
>SB_29414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 398 CGRVMLNRPIPLVLNGVPTLEGQWPWQIA 484
CGR R +V G+ + G WPWQ A
Sbjct: 16 CGRKTYTRKRRIV-GGIESANGAWPWQAA 43
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 28.3 bits (60), Expect = 3.6
Identities = 23/91 (25%), Positives = 30/91 (32%)
Frame = +2
Query: 212 PSNNNPRFTPAPPTYRXXXXXXXXXXHHDDNGSAGDVDDYEYFTGGQPTIILPSSNRSDQ 391
P+NN P P PPT + T G P P++ +
Sbjct: 360 PTNNTP--PPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPSE 417
Query: 392 NTCGRVMLNRPIPLVLNGVPTLEGQWPWQIA 484
CGR I +NG WPWQI+
Sbjct: 418 GKCGRKPAGARI---INGQNAQPHSWPWQIS 445
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 23 PDTRTQSPDVRPEHLVQTRPVQGRPSTEAERPVYVKPVNSANP 151
P RT R E + RP G P E +PV++ NP
Sbjct: 684 PVKRTVETAKRAEDMPPRRPSDGAPGRRPENAPQKRPVSTGNP 726
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 27.1 bits (57), Expect = 8.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 416 NRPIPLVLNGVPTLEGQWPWQI 481
N+P P ++ G WPWQ+
Sbjct: 244 NKPQPRIVGGREASPNSWPWQV 265
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 138 IPQIHRAFRVERYLLSRIIRIRTEG 212
+P+I+ + +LL R++ +RTEG
Sbjct: 300 LPEIYTELEISYFLLRRLLGVRTEG 324
>SB_33589| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 289
Score = 27.1 bits (57), Expect = 8.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 434 VLNGVPTLEGQWPWQIA 484
++ GV G WPWQ+A
Sbjct: 54 IVGGVEAAPGAWPWQVA 70
>SB_30263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 2 LQEFGTRPDTRTQSPDVRPEHLVQTRPVQGRPSTEAERPVYVKPVN 139
+Q+FGT T T S V P H TRP++ S+E + +P+N
Sbjct: 853 IQDFGTENATVTPSHLVSPRH---TRPIE---SSELMSGHHARPIN 892
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 27.1 bits (57), Expect = 8.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 416 NRPIPLVLNGVPTLEGQWPWQI 481
+RP+ ++ G G WPWQ+
Sbjct: 625 HRPLSRIVGGSTAPPGAWPWQV 646
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,476,480
Number of Sequences: 59808
Number of extensions: 308286
Number of successful extensions: 939
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -