Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0941
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61944-6|ABP49529.1|  529|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ...    29   2.4  
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family...    27   5.5  
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    27   5.5  
Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF003130-13|AAK73876.1|  220|Caenorhabditis elegans Hypothetical...    27   7.2  
Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    27   9.5  

>U61944-6|ABP49529.1|  529|Caenorhabditis elegans Hypothetical
           protein T12E12.6 protein.
          Length = 529

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 296 DDNGSAGDVDDYEYFTGGQPTIILPSSNRSDQ 391
           D N + G + +Y Y TGG P+I++ ++  S +
Sbjct: 321 DRNATVGQIYEYWYTTGGYPSILVENNGPSSR 352


>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
            protein R10F2.1 protein.
          Length = 2779

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 317  DVDDYEYFTGGQPTIILPSSNR 382
            DV+D+  F   QPT++LPSS R
Sbjct: 1422 DVNDHTPFIVSQPTVLLPSSYR 1443


>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
           protein 5, isoformb protein.
          Length = 1306

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 8   EFGTRPDTRTQSPDVRPEHLVQTRPVQGRPS 100
           +F  R  T + S  VRP HLVQ   V  +P+
Sbjct: 786 QFSLRNYTASVSEAVRPPHLVQVLSVMNKPT 816


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
            protein 5, isoforma protein.
          Length = 1544

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 8    EFGTRPDTRTQSPDVRPEHLVQTRPVQGRPS 100
            +F  R  T + S  VRP HLVQ   V  +P+
Sbjct: 930  QFSLRNYTASVSEAVRPPHLVQVLSVMNKPT 960


>Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical
           protein F36G3.3 protein.
          Length = 141

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +2

Query: 212 PSNNNPRFTPAPPTYRXXXXXXXXXXHHDDNGSAGDVDD 328
           P   NP + P  P Y           H+ DNG   +V D
Sbjct: 7   PPAYNPDYAPTQPVYHPSSHVTAPPYHYHDNGGFENVVD 45


>AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical
           protein K07H8.8 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 299 DNGSAGDVDDYEYFT 343
           D+G  GD+DD E+FT
Sbjct: 14  DSGEGGDIDDLEHFT 28


>AF003130-13|AAK73876.1|  220|Caenorhabditis elegans Hypothetical
           protein F55A12.10 protein.
          Length = 220

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 308 SAGDVDDYEYFTGGQPTIILPSSNRSD 388
           S+ D+DD E+F  G PT   PS   SD
Sbjct: 158 SSRDIDDDEFFMQGTPTSSNPSVAGSD 184


>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +2

Query: 344 GGQP-TIILPSSNRSDQNTC 400
           G QP  I++PSS+R+ QN+C
Sbjct: 161 GNQPIVIVIPSSSRNCQNSC 180


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
 Frame = +2

Query: 20  RPDTRTQSP-DVRPEHLVQTRPVQGRPSTEAERPVYVKPVNSANPXXXXXXXXXXXXYNQ 196
           RP    + P   RP   ++ RP   RP+   ERPV  +P     P              +
Sbjct: 181 RPTPYIERPVPARPAPYIE-RPEPARPAPYIERPVPARPAPYIEPTPARPAPYIEPSTAK 239

Query: 197 NQDR-GPSNNNPRFTPAPPTYR 259
            Q R  P    P   P+  T R
Sbjct: 240 PQPRPQPPRTRPYVAPSTTTQR 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,022,408
Number of Sequences: 27780
Number of extensions: 215161
Number of successful extensions: 555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)